Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04570 and SGL_RS04575 are separated by 11 nucleotides SGL_RS04575 and SGL_RS04580 are separated by 63 nucleotides SGL_RS04580 and SGL_RS04585 are separated by 90 nucleotides SGL_RS04585 and SGL_RS04590 are separated by 33 nucleotides
SGL_RS04570: SGL_RS04570 - Uma2 family endonuclease, at 575,477 to 576,127
_RS04570
SGL_RS04575: SGL_RS04575 - hypothetical protein, at 576,139 to 576,870
_RS04575
SGL_RS04580: SGL_RS04580 - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 576,934 to 579,696
_RS04580
SGL_RS04585: SGL_RS04585 - response regulator, at 579,787 to 580,194
_RS04585
SGL_RS04590: SGL_RS04590 - zinc-dependent peptidase, at 580,228 to 581,055
_RS04590
Position (kb) 576
577
578
579
580 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 575.967 kb on - strand, within SGL_RS04570 at 576.156 kb on + strand at 576.164 kb on - strand at 576.170 kb on + strand at 576.170 kb on + strand at 576.178 kb on - strand at 576.291 kb on - strand, within SGL_RS04575 at 576.293 kb on + strand, within SGL_RS04575 at 576.421 kb on - strand, within SGL_RS04575 at 576.512 kb on + strand, within SGL_RS04575 at 576.584 kb on - strand, within SGL_RS04575 at 576.595 kb on + strand, within SGL_RS04575 at 576.637 kb on - strand, within SGL_RS04575 at 576.639 kb on + strand, within SGL_RS04575 at 576.658 kb on - strand, within SGL_RS04575 at 576.731 kb on + strand, within SGL_RS04575 at 576.872 kb on - strand at 576.932 kb on - strand at 577.015 kb on - strand at 577.033 kb on + strand at 577.046 kb on - strand at 577.092 kb on - strand at 577.209 kb on - strand at 577.342 kb on + strand, within SGL_RS04580 at 577.712 kb on + strand, within SGL_RS04580 at 577.829 kb on + strand, within SGL_RS04580 at 577.976 kb on + strand, within SGL_RS04580 at 578.009 kb on - strand, within SGL_RS04580 at 578.904 kb on + strand, within SGL_RS04580 at 579.178 kb on + strand, within SGL_RS04580 at 579.526 kb on + strand at 579.891 kb on + strand, within SGL_RS04585 at 579.918 kb on - strand, within SGL_RS04585 at 579.962 kb on - strand, within SGL_RS04585 at 579.979 kb on + strand, within SGL_RS04585 at 580.057 kb on + strand, within SGL_RS04585 at 580.106 kb on - strand, within SGL_RS04585 at 580.118 kb on - strand, within SGL_RS04585 at 580.197 kb on - strand at 580.507 kb on + strand, within SGL_RS04590 at 580.507 kb on + strand, within SGL_RS04590 at 580.585 kb on - strand, within SGL_RS04590 at 580.665 kb on + strand, within SGL_RS04590
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 575,967 - SGL_RS04570 0.75 -0.0 576,156 + +0.2 576,164 - -0.0 576,170 + +0.4 576,170 + +0.1 576,178 - -0.2 576,291 - SGL_RS04575 0.21 +0.1 576,293 + SGL_RS04575 0.21 +0.0 576,421 - SGL_RS04575 0.39 +0.2 576,512 + SGL_RS04575 0.51 +0.0 576,584 - SGL_RS04575 0.61 +0.3 576,595 + SGL_RS04575 0.62 +0.3 576,637 - SGL_RS04575 0.68 +0.1 576,639 + SGL_RS04575 0.68 +0.0 576,658 - SGL_RS04575 0.71 +0.0 576,731 + SGL_RS04575 0.81 +0.0 576,872 - -0.1 576,932 - +0.6 577,015 - -3.0 577,033 + -2.4 577,046 - -2.3 577,092 - +0.7 577,209 - -0.5 577,342 + SGL_RS04580 0.15 -0.8 577,712 + SGL_RS04580 0.28 -1.7 577,829 + SGL_RS04580 0.32 -1.2 577,976 + SGL_RS04580 0.38 -0.3 578,009 - SGL_RS04580 0.39 -0.3 578,904 + SGL_RS04580 0.71 -3.4 579,178 + SGL_RS04580 0.81 -2.6 579,526 + -2.8 579,891 + SGL_RS04585 0.25 +0.0 579,918 - SGL_RS04585 0.32 +0.2 579,962 - SGL_RS04585 0.43 +0.0 579,979 + SGL_RS04585 0.47 -0.3 580,057 + SGL_RS04585 0.66 +0.6 580,106 - SGL_RS04585 0.78 -0.6 580,118 - SGL_RS04585 0.81 +1.2 580,197 - +2.2 580,507 + SGL_RS04590 0.34 +0.1 580,507 + SGL_RS04590 0.34 -0.1 580,585 - SGL_RS04590 0.43 +0.3 580,665 + SGL_RS04590 0.53 -0.1
Or see this region's nucleotide sequence