Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02570 and SGL_RS02580 are separated by 571 nucleotides SGL_RS02580 and SGL_RS02585 are separated by 146 nucleotides SGL_RS02585 and SGL_RS02590 are separated by 23 nucleotides
SGL_RS02570: SGL_RS02570 - amino acid ABC transporter substrate-binding protein, at 152,154 to 153,050
_RS02570
SGL_RS02580: SGL_RS02580 - DUF1818 family protein, at 153,622 to 153,996
_RS02580
SGL_RS02585: SGL_RS02585 - LptA/OstA family protein, at 154,143 to 154,679
_RS02585
SGL_RS02590: SGL_RS02590 - LPS export ABC transporter ATP-binding protein, at 154,703 to 155,461
_RS02590
Position (kb) 153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 152.641 kb on + strand, within SGL_RS02570 at 152.900 kb on + strand, within SGL_RS02570 at 152.915 kb on - strand, within SGL_RS02570 at 152.975 kb on - strand at 153.006 kb on - strand at 153.052 kb on + strand at 153.139 kb on + strand at 153.140 kb on - strand at 153.147 kb on - strand at 153.882 kb on - strand, within SGL_RS02580 at 153.920 kb on - strand, within SGL_RS02580 at 153.927 kb on - strand, within SGL_RS02580 at 153.940 kb on - strand, within SGL_RS02580 at 154.020 kb on - strand at 154.031 kb on - strand at 154.037 kb on + strand at 154.587 kb on - strand, within SGL_RS02585 at 154.592 kb on + strand, within SGL_RS02585 at 154.600 kb on - strand, within SGL_RS02585 at 154.609 kb on + strand, within SGL_RS02585 at 154.617 kb on - strand, within SGL_RS02585
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 152,641 + SGL_RS02570 0.54 -0.0 152,900 + SGL_RS02570 0.83 -0.0 152,915 - SGL_RS02570 0.85 -0.9 152,975 - -0.1 153,006 - -0.1 153,052 + +0.0 153,139 + +0.3 153,140 - +0.1 153,147 - -0.0 153,882 - SGL_RS02580 0.69 -1.7 153,920 - SGL_RS02580 0.79 -2.8 153,927 - SGL_RS02580 0.81 -2.0 153,940 - SGL_RS02580 0.85 +0.5 154,020 - +0.2 154,031 - +0.1 154,037 + +0.0 154,587 - SGL_RS02585 0.83 -0.9 154,592 + SGL_RS02585 0.84 +0.1 154,600 - SGL_RS02585 0.85 +0.9 154,609 + SGL_RS02585 0.87 +0.2 154,617 - SGL_RS02585 0.88 -0.1
Or see this region's nucleotide sequence