Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16205

Experiment: D-Sorbitol 500 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS16195 and SGL_RS18430 are separated by 297 nucleotidesSGL_RS18430 and SGL_RS16205 are separated by 91 nucleotidesSGL_RS16205 and SGL_RS16210 overlap by 17 nucleotidesSGL_RS16210 and SGL_RS16215 are separated by 209 nucleotides SGL_RS16195: SGL_RS16195 - DUF4189 domain-containing protein, at 3,083,746 to 3,084,123 _RS16195 SGL_RS18430: SGL_RS18430 - YqaE/Pmp3 family membrane protein, at 3,084,421 to 3,084,585 _RS18430 SGL_RS16205: SGL_RS16205 - hydantoinase B/oxoprolinase family protein, at 3,084,677 to 3,088,435 _RS16205 SGL_RS16210: SGL_RS16210 - CYTH domain-containing protein, at 3,088,419 to 3,088,883 _RS16210 SGL_RS16215: SGL_RS16215 - hypothetical protein, at 3,089,093 to 3,089,515 _RS16215 Position (kb) 3084 3085 3086 3087 3088 3089Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3083.846 kb on + strand, within SGL_RS16195at 3083.846 kb on + strand, within SGL_RS16195at 3083.853 kb on + strand, within SGL_RS16195at 3083.854 kb on - strand, within SGL_RS16195at 3083.854 kb on - strand, within SGL_RS16195at 3083.854 kb on - strand, within SGL_RS16195at 3083.854 kb on - strand, within SGL_RS16195at 3083.859 kb on - strand, within SGL_RS16195at 3084.004 kb on + strand, within SGL_RS16195at 3084.011 kb on - strand, within SGL_RS16195at 3084.034 kb on + strand, within SGL_RS16195at 3084.059 kb on - strand, within SGL_RS16195at 3084.259 kb on + strandat 3084.357 kb on - strandat 3084.542 kb on - strand, within SGL_RS18430at 3084.965 kb on - strandat 3085.005 kb on + strandat 3085.095 kb on - strand, within SGL_RS16205at 3085.157 kb on - strand, within SGL_RS16205at 3085.181 kb on + strand, within SGL_RS16205at 3085.184 kb on - strand, within SGL_RS16205at 3085.186 kb on + strand, within SGL_RS16205at 3085.186 kb on + strand, within SGL_RS16205at 3085.194 kb on - strand, within SGL_RS16205at 3085.390 kb on + strand, within SGL_RS16205at 3085.428 kb on + strand, within SGL_RS16205at 3085.457 kb on + strand, within SGL_RS16205at 3085.484 kb on + strand, within SGL_RS16205at 3085.532 kb on + strand, within SGL_RS16205at 3085.540 kb on - strand, within SGL_RS16205at 3085.540 kb on - strand, within SGL_RS16205at 3085.565 kb on + strand, within SGL_RS16205at 3085.762 kb on + strand, within SGL_RS16205at 3085.762 kb on + strand, within SGL_RS16205at 3085.768 kb on + strand, within SGL_RS16205at 3085.770 kb on - strand, within SGL_RS16205at 3085.770 kb on - strand, within SGL_RS16205at 3085.776 kb on - strand, within SGL_RS16205at 3085.786 kb on - strand, within SGL_RS16205at 3085.851 kb on + strand, within SGL_RS16205at 3086.064 kb on + strand, within SGL_RS16205at 3086.069 kb on + strand, within SGL_RS16205at 3086.069 kb on + strand, within SGL_RS16205at 3086.129 kb on + strand, within SGL_RS16205at 3086.187 kb on + strand, within SGL_RS16205at 3086.230 kb on + strand, within SGL_RS16205at 3086.238 kb on - strand, within SGL_RS16205at 3086.513 kb on - strand, within SGL_RS16205at 3086.644 kb on + strand, within SGL_RS16205at 3086.682 kb on - strand, within SGL_RS16205at 3086.871 kb on - strand, within SGL_RS16205at 3087.080 kb on - strand, within SGL_RS16205at 3087.121 kb on - strand, within SGL_RS16205at 3087.160 kb on - strand, within SGL_RS16205at 3087.162 kb on + strand, within SGL_RS16205at 3087.220 kb on + strand, within SGL_RS16205at 3087.226 kb on - strand, within SGL_RS16205at 3087.472 kb on - strand, within SGL_RS16205at 3087.545 kb on + strand, within SGL_RS16205at 3087.609 kb on - strand, within SGL_RS16205at 3087.626 kb on + strand, within SGL_RS16205at 3087.634 kb on - strand, within SGL_RS16205at 3087.674 kb on + strand, within SGL_RS16205at 3087.682 kb on - strand, within SGL_RS16205at 3087.682 kb on - strand, within SGL_RS16205at 3087.682 kb on - strand, within SGL_RS16205at 3087.879 kb on + strand, within SGL_RS16205at 3087.928 kb on + strand, within SGL_RS16205at 3087.938 kb on + strand, within SGL_RS16205at 3088.075 kb on - strandat 3088.192 kb on + strandat 3088.291 kb on + strandat 3088.415 kb on + strandat 3088.415 kb on + strandat 3088.415 kb on + strandat 3088.415 kb on + strandat 3088.517 kb on + strand, within SGL_RS16210at 3088.588 kb on + strand, within SGL_RS16210at 3088.595 kb on - strand, within SGL_RS16210at 3088.826 kb on - strand, within SGL_RS16210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
remove
3,083,846 + SGL_RS16195 0.26 -0.2
3,083,846 + SGL_RS16195 0.26 +0.0
3,083,853 + SGL_RS16195 0.28 +0.9
3,083,854 - SGL_RS16195 0.29 +0.7
3,083,854 - SGL_RS16195 0.29 +0.4
3,083,854 - SGL_RS16195 0.29 +0.5
3,083,854 - SGL_RS16195 0.29 +0.1
3,083,859 - SGL_RS16195 0.30 +0.3
3,084,004 + SGL_RS16195 0.68 -0.0
3,084,011 - SGL_RS16195 0.70 +0.3
3,084,034 + SGL_RS16195 0.76 +0.2
3,084,059 - SGL_RS16195 0.83 -0.6
3,084,259 + -0.1
3,084,357 - -0.7
3,084,542 - SGL_RS18430 0.73 -1.3
3,084,965 - -1.6
3,085,005 + -1.6
3,085,095 - SGL_RS16205 0.11 -0.8
3,085,157 - SGL_RS16205 0.13 -1.2
3,085,181 + SGL_RS16205 0.13 -1.7
3,085,184 - SGL_RS16205 0.13 -1.6
3,085,186 + SGL_RS16205 0.14 -2.0
3,085,186 + SGL_RS16205 0.14 -1.7
3,085,194 - SGL_RS16205 0.14 -1.5
3,085,390 + SGL_RS16205 0.19 -1.2
3,085,428 + SGL_RS16205 0.20 -1.8
3,085,457 + SGL_RS16205 0.21 -1.8
3,085,484 + SGL_RS16205 0.21 -3.0
3,085,532 + SGL_RS16205 0.23 -1.0
3,085,540 - SGL_RS16205 0.23 -1.9
3,085,540 - SGL_RS16205 0.23 -2.0
3,085,565 + SGL_RS16205 0.24 -1.5
3,085,762 + SGL_RS16205 0.29 -1.8
3,085,762 + SGL_RS16205 0.29 -1.3
3,085,768 + SGL_RS16205 0.29 -0.3
3,085,770 - SGL_RS16205 0.29 -1.4
3,085,770 - SGL_RS16205 0.29 -2.0
3,085,776 - SGL_RS16205 0.29 -2.0
3,085,786 - SGL_RS16205 0.30 -1.3
3,085,851 + SGL_RS16205 0.31 -1.5
3,086,064 + SGL_RS16205 0.37 -1.8
3,086,069 + SGL_RS16205 0.37 -2.1
3,086,069 + SGL_RS16205 0.37 -1.0
3,086,129 + SGL_RS16205 0.39 -2.3
3,086,187 + SGL_RS16205 0.40 +0.3
3,086,230 + SGL_RS16205 0.41 -0.2
3,086,238 - SGL_RS16205 0.42 -2.0
3,086,513 - SGL_RS16205 0.49 -2.6
3,086,644 + SGL_RS16205 0.52 -1.3
3,086,682 - SGL_RS16205 0.53 -1.5
3,086,871 - SGL_RS16205 0.58 -1.7
3,087,080 - SGL_RS16205 0.64 -1.9
3,087,121 - SGL_RS16205 0.65 -2.1
3,087,160 - SGL_RS16205 0.66 -1.8
3,087,162 + SGL_RS16205 0.66 -1.8
3,087,220 + SGL_RS16205 0.68 -4.1
3,087,226 - SGL_RS16205 0.68 -1.7
3,087,472 - SGL_RS16205 0.74 -0.4
3,087,545 + SGL_RS16205 0.76 -1.5
3,087,609 - SGL_RS16205 0.78 -1.7
3,087,626 + SGL_RS16205 0.78 +0.1
3,087,634 - SGL_RS16205 0.79 -2.1
3,087,674 + SGL_RS16205 0.80 -1.7
3,087,682 - SGL_RS16205 0.80 -1.1
3,087,682 - SGL_RS16205 0.80 -2.1
3,087,682 - SGL_RS16205 0.80 -1.9
3,087,879 + SGL_RS16205 0.85 -2.6
3,087,928 + SGL_RS16205 0.86 -0.7
3,087,938 + SGL_RS16205 0.87 -2.0
3,088,075 - -1.8
3,088,192 + -1.6
3,088,291 + -1.3
3,088,415 + -0.1
3,088,415 + -0.7
3,088,415 + +0.8
3,088,415 + -0.1
3,088,517 + SGL_RS16210 0.21 +1.8
3,088,588 + SGL_RS16210 0.36 +2.1
3,088,595 - SGL_RS16210 0.38 +2.4
3,088,826 - SGL_RS16210 0.88 +1.9

Or see this region's nucleotide sequence