Experiment: D-Sorbitol 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16195 and SGL_RS18430 are separated by 297 nucleotides SGL_RS18430 and SGL_RS16205 are separated by 91 nucleotides SGL_RS16205 and SGL_RS16210 overlap by 17 nucleotides SGL_RS16210 and SGL_RS16215 are separated by 209 nucleotides
SGL_RS16195: SGL_RS16195 - DUF4189 domain-containing protein, at 3,083,746 to 3,084,123
_RS16195
SGL_RS18430: SGL_RS18430 - YqaE/Pmp3 family membrane protein, at 3,084,421 to 3,084,585
_RS18430
SGL_RS16205: SGL_RS16205 - hydantoinase B/oxoprolinase family protein, at 3,084,677 to 3,088,435
_RS16205
SGL_RS16210: SGL_RS16210 - CYTH domain-containing protein, at 3,088,419 to 3,088,883
_RS16210
SGL_RS16215: SGL_RS16215 - hypothetical protein, at 3,089,093 to 3,089,515
_RS16215
Position (kb)
3084
3085
3086
3087
3088
3089 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3083.846 kb on + strand, within SGL_RS16195 at 3083.846 kb on + strand, within SGL_RS16195 at 3083.853 kb on + strand, within SGL_RS16195 at 3083.854 kb on - strand, within SGL_RS16195 at 3083.854 kb on - strand, within SGL_RS16195 at 3083.854 kb on - strand, within SGL_RS16195 at 3083.854 kb on - strand, within SGL_RS16195 at 3083.859 kb on - strand, within SGL_RS16195 at 3084.004 kb on + strand, within SGL_RS16195 at 3084.011 kb on - strand, within SGL_RS16195 at 3084.034 kb on + strand, within SGL_RS16195 at 3084.059 kb on - strand, within SGL_RS16195 at 3084.259 kb on + strand at 3084.357 kb on - strand at 3084.542 kb on - strand, within SGL_RS18430 at 3084.965 kb on - strand at 3085.005 kb on + strand at 3085.095 kb on - strand, within SGL_RS16205 at 3085.157 kb on - strand, within SGL_RS16205 at 3085.181 kb on + strand, within SGL_RS16205 at 3085.184 kb on - strand, within SGL_RS16205 at 3085.186 kb on + strand, within SGL_RS16205 at 3085.186 kb on + strand, within SGL_RS16205 at 3085.194 kb on - strand, within SGL_RS16205 at 3085.390 kb on + strand, within SGL_RS16205 at 3085.428 kb on + strand, within SGL_RS16205 at 3085.457 kb on + strand, within SGL_RS16205 at 3085.484 kb on + strand, within SGL_RS16205 at 3085.532 kb on + strand, within SGL_RS16205 at 3085.540 kb on - strand, within SGL_RS16205 at 3085.540 kb on - strand, within SGL_RS16205 at 3085.565 kb on + strand, within SGL_RS16205 at 3085.762 kb on + strand, within SGL_RS16205 at 3085.762 kb on + strand, within SGL_RS16205 at 3085.768 kb on + strand, within SGL_RS16205 at 3085.770 kb on - strand, within SGL_RS16205 at 3085.770 kb on - strand, within SGL_RS16205 at 3085.776 kb on - strand, within SGL_RS16205 at 3085.786 kb on - strand, within SGL_RS16205 at 3085.851 kb on + strand, within SGL_RS16205 at 3086.064 kb on + strand, within SGL_RS16205 at 3086.069 kb on + strand, within SGL_RS16205 at 3086.069 kb on + strand, within SGL_RS16205 at 3086.129 kb on + strand, within SGL_RS16205 at 3086.187 kb on + strand, within SGL_RS16205 at 3086.230 kb on + strand, within SGL_RS16205 at 3086.238 kb on - strand, within SGL_RS16205 at 3086.513 kb on - strand, within SGL_RS16205 at 3086.644 kb on + strand, within SGL_RS16205 at 3086.682 kb on - strand, within SGL_RS16205 at 3086.871 kb on - strand, within SGL_RS16205 at 3087.080 kb on - strand, within SGL_RS16205 at 3087.121 kb on - strand, within SGL_RS16205 at 3087.160 kb on - strand, within SGL_RS16205 at 3087.162 kb on + strand, within SGL_RS16205 at 3087.220 kb on + strand, within SGL_RS16205 at 3087.226 kb on - strand, within SGL_RS16205 at 3087.472 kb on - strand, within SGL_RS16205 at 3087.545 kb on + strand, within SGL_RS16205 at 3087.609 kb on - strand, within SGL_RS16205 at 3087.626 kb on + strand, within SGL_RS16205 at 3087.634 kb on - strand, within SGL_RS16205 at 3087.674 kb on + strand, within SGL_RS16205 at 3087.682 kb on - strand, within SGL_RS16205 at 3087.682 kb on - strand, within SGL_RS16205 at 3087.682 kb on - strand, within SGL_RS16205 at 3087.879 kb on + strand, within SGL_RS16205 at 3087.928 kb on + strand, within SGL_RS16205 at 3087.938 kb on + strand, within SGL_RS16205 at 3088.075 kb on - strand at 3088.192 kb on + strand at 3088.291 kb on + strand at 3088.415 kb on + strand at 3088.415 kb on + strand at 3088.415 kb on + strand at 3088.415 kb on + strand at 3088.517 kb on + strand, within SGL_RS16210 at 3088.588 kb on + strand, within SGL_RS16210 at 3088.595 kb on - strand, within SGL_RS16210 at 3088.826 kb on - strand, within SGL_RS16210
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM remove 3,083,846 + SGL_RS16195 0.26 -0.2 3,083,846 + SGL_RS16195 0.26 +0.0 3,083,853 + SGL_RS16195 0.28 +0.9 3,083,854 - SGL_RS16195 0.29 +0.7 3,083,854 - SGL_RS16195 0.29 +0.4 3,083,854 - SGL_RS16195 0.29 +0.5 3,083,854 - SGL_RS16195 0.29 +0.1 3,083,859 - SGL_RS16195 0.30 +0.3 3,084,004 + SGL_RS16195 0.68 -0.0 3,084,011 - SGL_RS16195 0.70 +0.3 3,084,034 + SGL_RS16195 0.76 +0.2 3,084,059 - SGL_RS16195 0.83 -0.6 3,084,259 + -0.1 3,084,357 - -0.7 3,084,542 - SGL_RS18430 0.73 -1.3 3,084,965 - -1.6 3,085,005 + -1.6 3,085,095 - SGL_RS16205 0.11 -0.8 3,085,157 - SGL_RS16205 0.13 -1.2 3,085,181 + SGL_RS16205 0.13 -1.7 3,085,184 - SGL_RS16205 0.13 -1.6 3,085,186 + SGL_RS16205 0.14 -2.0 3,085,186 + SGL_RS16205 0.14 -1.7 3,085,194 - SGL_RS16205 0.14 -1.5 3,085,390 + SGL_RS16205 0.19 -1.2 3,085,428 + SGL_RS16205 0.20 -1.8 3,085,457 + SGL_RS16205 0.21 -1.8 3,085,484 + SGL_RS16205 0.21 -3.0 3,085,532 + SGL_RS16205 0.23 -1.0 3,085,540 - SGL_RS16205 0.23 -1.9 3,085,540 - SGL_RS16205 0.23 -2.0 3,085,565 + SGL_RS16205 0.24 -1.5 3,085,762 + SGL_RS16205 0.29 -1.8 3,085,762 + SGL_RS16205 0.29 -1.3 3,085,768 + SGL_RS16205 0.29 -0.3 3,085,770 - SGL_RS16205 0.29 -1.4 3,085,770 - SGL_RS16205 0.29 -2.0 3,085,776 - SGL_RS16205 0.29 -2.0 3,085,786 - SGL_RS16205 0.30 -1.3 3,085,851 + SGL_RS16205 0.31 -1.5 3,086,064 + SGL_RS16205 0.37 -1.8 3,086,069 + SGL_RS16205 0.37 -2.1 3,086,069 + SGL_RS16205 0.37 -1.0 3,086,129 + SGL_RS16205 0.39 -2.3 3,086,187 + SGL_RS16205 0.40 +0.3 3,086,230 + SGL_RS16205 0.41 -0.2 3,086,238 - SGL_RS16205 0.42 -2.0 3,086,513 - SGL_RS16205 0.49 -2.6 3,086,644 + SGL_RS16205 0.52 -1.3 3,086,682 - SGL_RS16205 0.53 -1.5 3,086,871 - SGL_RS16205 0.58 -1.7 3,087,080 - SGL_RS16205 0.64 -1.9 3,087,121 - SGL_RS16205 0.65 -2.1 3,087,160 - SGL_RS16205 0.66 -1.8 3,087,162 + SGL_RS16205 0.66 -1.8 3,087,220 + SGL_RS16205 0.68 -4.1 3,087,226 - SGL_RS16205 0.68 -1.7 3,087,472 - SGL_RS16205 0.74 -0.4 3,087,545 + SGL_RS16205 0.76 -1.5 3,087,609 - SGL_RS16205 0.78 -1.7 3,087,626 + SGL_RS16205 0.78 +0.1 3,087,634 - SGL_RS16205 0.79 -2.1 3,087,674 + SGL_RS16205 0.80 -1.7 3,087,682 - SGL_RS16205 0.80 -1.1 3,087,682 - SGL_RS16205 0.80 -2.1 3,087,682 - SGL_RS16205 0.80 -1.9 3,087,879 + SGL_RS16205 0.85 -2.6 3,087,928 + SGL_RS16205 0.86 -0.7 3,087,938 + SGL_RS16205 0.87 -2.0 3,088,075 - -1.8 3,088,192 + -1.6 3,088,291 + -1.3 3,088,415 + -0.1 3,088,415 + -0.7 3,088,415 + +0.8 3,088,415 + -0.1 3,088,517 + SGL_RS16210 0.21 +1.8 3,088,588 + SGL_RS16210 0.36 +2.1 3,088,595 - SGL_RS16210 0.38 +2.4 3,088,826 - SGL_RS16210 0.88 +1.9
Or see this region's nucleotide sequence