Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16075

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16065 and SGL_RS16070 are separated by 79 nucleotidesSGL_RS16070 and SGL_RS16075 are separated by 114 nucleotidesSGL_RS16075 and SGL_RS16080 are separated by 65 nucleotides SGL_RS16065: SGL_RS16065 - CusA/CzcA family heavy metal efflux RND transporter, at 3,051,772 to 3,054,936 _RS16065 SGL_RS16070: SGL_RS16070 - glycoside hydrolase family protein, at 3,055,016 to 3,055,699 _RS16070 SGL_RS16075: SGL_RS16075 - MFS transporter, at 3,055,814 to 3,057,151 _RS16075 SGL_RS16080: SGL_RS16080 - precorrin-8X methylmutase, at 3,057,217 to 3,058,329 _RS16080 Position (kb) 3055 3056 3057 3058Strain fitness (log2 ratio) -1 0 1at 3054.822 kb on - strandat 3054.869 kb on + strandat 3055.512 kb on + strand, within SGL_RS16070at 3055.553 kb on + strand, within SGL_RS16070at 3055.556 kb on - strand, within SGL_RS16070at 3055.865 kb on + strandat 3055.867 kb on + strandat 3055.867 kb on + strandat 3055.875 kb on - strandat 3055.875 kb on - strandat 3055.875 kb on - strandat 3055.904 kb on + strandat 3055.904 kb on + strandat 3055.912 kb on - strandat 3055.912 kb on - strandat 3055.912 kb on - strandat 3055.914 kb on + strandat 3055.915 kb on + strandat 3055.917 kb on - strandat 3055.961 kb on + strand, within SGL_RS16075at 3055.969 kb on - strand, within SGL_RS16075at 3055.980 kb on - strand, within SGL_RS16075at 3055.987 kb on - strand, within SGL_RS16075at 3055.994 kb on - strand, within SGL_RS16075at 3056.006 kb on + strand, within SGL_RS16075at 3056.026 kb on - strand, within SGL_RS16075at 3056.029 kb on + strand, within SGL_RS16075at 3056.078 kb on - strand, within SGL_RS16075at 3056.078 kb on - strand, within SGL_RS16075at 3056.094 kb on - strand, within SGL_RS16075at 3056.116 kb on + strand, within SGL_RS16075at 3056.117 kb on + strand, within SGL_RS16075at 3056.182 kb on + strand, within SGL_RS16075at 3056.195 kb on + strand, within SGL_RS16075at 3056.240 kb on + strand, within SGL_RS16075at 3056.240 kb on + strand, within SGL_RS16075at 3056.248 kb on - strand, within SGL_RS16075at 3056.248 kb on - strand, within SGL_RS16075at 3056.294 kb on - strand, within SGL_RS16075at 3056.298 kb on - strand, within SGL_RS16075at 3056.418 kb on - strand, within SGL_RS16075at 3056.428 kb on - strand, within SGL_RS16075at 3056.529 kb on - strand, within SGL_RS16075at 3056.582 kb on - strand, within SGL_RS16075at 3056.653 kb on + strand, within SGL_RS16075at 3056.713 kb on - strand, within SGL_RS16075at 3056.713 kb on - strand, within SGL_RS16075at 3056.713 kb on - strand, within SGL_RS16075at 3056.716 kb on - strand, within SGL_RS16075at 3056.739 kb on - strand, within SGL_RS16075at 3056.794 kb on - strand, within SGL_RS16075at 3056.810 kb on + strand, within SGL_RS16075at 3056.811 kb on + strand, within SGL_RS16075at 3056.917 kb on - strand, within SGL_RS16075at 3056.931 kb on - strand, within SGL_RS16075at 3056.967 kb on + strand, within SGL_RS16075at 3056.982 kb on + strand, within SGL_RS16075at 3056.987 kb on + strand, within SGL_RS16075at 3057.014 kb on + strand, within SGL_RS16075at 3057.076 kb on + strandat 3057.087 kb on + strandat 3057.145 kb on + strandat 3057.316 kb on + strandat 3057.324 kb on - strandat 3057.344 kb on - strand, within SGL_RS16080at 3057.423 kb on + strand, within SGL_RS16080at 3057.451 kb on + strand, within SGL_RS16080at 3057.456 kb on + strand, within SGL_RS16080at 3057.465 kb on + strand, within SGL_RS16080at 3057.465 kb on + strand, within SGL_RS16080at 3057.532 kb on - strand, within SGL_RS16080at 3057.549 kb on - strand, within SGL_RS16080at 3057.554 kb on + strand, within SGL_RS16080at 3057.561 kb on + strand, within SGL_RS16080at 3057.561 kb on + strand, within SGL_RS16080at 3057.564 kb on - strand, within SGL_RS16080at 3057.564 kb on - strand, within SGL_RS16080at 3057.612 kb on - strand, within SGL_RS16080at 3057.708 kb on - strand, within SGL_RS16080at 3057.744 kb on + strand, within SGL_RS16080at 3057.749 kb on + strand, within SGL_RS16080at 3057.754 kb on + strand, within SGL_RS16080at 3057.767 kb on - strand, within SGL_RS16080at 3057.862 kb on - strand, within SGL_RS16080at 3057.897 kb on + strand, within SGL_RS16080at 3057.897 kb on + strand, within SGL_RS16080at 3057.905 kb on - strand, within SGL_RS16080at 3057.906 kb on - strand, within SGL_RS16080at 3057.993 kb on - strand, within SGL_RS16080at 3058.010 kb on + strand, within SGL_RS16080at 3058.086 kb on - strand, within SGL_RS16080at 3058.100 kb on - strand, within SGL_RS16080

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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3,054,822 - +0.0
3,054,869 + -0.1
3,055,512 + SGL_RS16070 0.73 +0.8
3,055,553 + SGL_RS16070 0.79 -0.1
3,055,556 - SGL_RS16070 0.79 +0.4
3,055,865 + -0.5
3,055,867 + -1.0
3,055,867 + -0.1
3,055,875 - -0.6
3,055,875 - -0.1
3,055,875 - -0.3
3,055,904 + -0.4
3,055,904 + -0.1
3,055,912 - -0.2
3,055,912 - -0.7
3,055,912 - -1.1
3,055,914 + -0.3
3,055,915 + +0.1
3,055,917 - -0.7
3,055,961 + SGL_RS16075 0.11 -0.4
3,055,969 - SGL_RS16075 0.12 -0.2
3,055,980 - SGL_RS16075 0.12 -0.4
3,055,987 - SGL_RS16075 0.13 +0.0
3,055,994 - SGL_RS16075 0.13 -0.7
3,056,006 + SGL_RS16075 0.14 -0.6
3,056,026 - SGL_RS16075 0.16 -1.0
3,056,029 + SGL_RS16075 0.16 +0.4
3,056,078 - SGL_RS16075 0.20 -0.2
3,056,078 - SGL_RS16075 0.20 -0.2
3,056,094 - SGL_RS16075 0.21 -0.2
3,056,116 + SGL_RS16075 0.23 -0.4
3,056,117 + SGL_RS16075 0.23 -0.2
3,056,182 + SGL_RS16075 0.28 -0.3
3,056,195 + SGL_RS16075 0.28 -0.4
3,056,240 + SGL_RS16075 0.32 -0.3
3,056,240 + SGL_RS16075 0.32 -0.4
3,056,248 - SGL_RS16075 0.32 -0.3
3,056,248 - SGL_RS16075 0.32 -0.3
3,056,294 - SGL_RS16075 0.36 -0.6
3,056,298 - SGL_RS16075 0.36 -0.5
3,056,418 - SGL_RS16075 0.45 -0.1
3,056,428 - SGL_RS16075 0.46 -0.3
3,056,529 - SGL_RS16075 0.53 -0.6
3,056,582 - SGL_RS16075 0.57 +0.1
3,056,653 + SGL_RS16075 0.63 +0.0
3,056,713 - SGL_RS16075 0.67 -0.4
3,056,713 - SGL_RS16075 0.67 -0.4
3,056,713 - SGL_RS16075 0.67 -1.3
3,056,716 - SGL_RS16075 0.67 -0.3
3,056,739 - SGL_RS16075 0.69 -0.2
3,056,794 - SGL_RS16075 0.73 -0.4
3,056,810 + SGL_RS16075 0.74 +0.1
3,056,811 + SGL_RS16075 0.75 -1.2
3,056,917 - SGL_RS16075 0.82 -1.2
3,056,931 - SGL_RS16075 0.83 -0.1
3,056,967 + SGL_RS16075 0.86 -1.1
3,056,982 + SGL_RS16075 0.87 -0.3
3,056,987 + SGL_RS16075 0.88 -0.2
3,057,014 + SGL_RS16075 0.90 -0.3
3,057,076 + +0.1
3,057,087 + -0.1
3,057,145 + +1.3
3,057,316 + -0.6
3,057,324 - +0.5
3,057,344 - SGL_RS16080 0.11 -0.5
3,057,423 + SGL_RS16080 0.19 +0.1
3,057,451 + SGL_RS16080 0.21 +0.3
3,057,456 + SGL_RS16080 0.21 -0.7
3,057,465 + SGL_RS16080 0.22 +0.5
3,057,465 + SGL_RS16080 0.22 +0.1
3,057,532 - SGL_RS16080 0.28 -0.3
3,057,549 - SGL_RS16080 0.30 -0.9
3,057,554 + SGL_RS16080 0.30 +0.1
3,057,561 + SGL_RS16080 0.31 -0.3
3,057,561 + SGL_RS16080 0.31 -0.1
3,057,564 - SGL_RS16080 0.31 +0.1
3,057,564 - SGL_RS16080 0.31 +0.6
3,057,612 - SGL_RS16080 0.35 -1.0
3,057,708 - SGL_RS16080 0.44 +0.0
3,057,744 + SGL_RS16080 0.47 +0.1
3,057,749 + SGL_RS16080 0.48 -0.1
3,057,754 + SGL_RS16080 0.48 -0.2
3,057,767 - SGL_RS16080 0.49 -0.0
3,057,862 - SGL_RS16080 0.58 +0.2
3,057,897 + SGL_RS16080 0.61 -0.7
3,057,897 + SGL_RS16080 0.61 +0.1
3,057,905 - SGL_RS16080 0.62 +0.5
3,057,906 - SGL_RS16080 0.62 +0.0
3,057,993 - SGL_RS16080 0.70 +0.6
3,058,010 + SGL_RS16080 0.71 -0.1
3,058,086 - SGL_RS16080 0.78 -0.2
3,058,100 - SGL_RS16080 0.79 +0.4

Or see this region's nucleotide sequence