Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06880

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06875 and SGL_RS06880 are separated by 167 nucleotidesSGL_RS06880 and SGL_RS06885 are separated by 56 nucleotides SGL_RS06875: SGL_RS06875 - DNA polymerase III subunit gamma/tau, at 1,065,660 to 1,069,010 _RS06875 SGL_RS06880: SGL_RS06880 - VOC family protein, at 1,069,178 to 1,069,609 _RS06880 SGL_RS06885: SGL_RS06885 - c-type cytochrome, at 1,069,666 to 1,071,702 _RS06885 Position (kb) 1069 1070Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1069.146 kb on + strandat 1069.261 kb on + strand, within SGL_RS06880at 1069.261 kb on + strand, within SGL_RS06880at 1069.363 kb on + strand, within SGL_RS06880at 1069.531 kb on - strand, within SGL_RS06880at 1069.799 kb on + strandat 1069.846 kb on + strandat 1069.846 kb on + strandat 1069.985 kb on + strand, within SGL_RS06885at 1070.039 kb on - strand, within SGL_RS06885at 1070.088 kb on - strand, within SGL_RS06885at 1070.114 kb on - strand, within SGL_RS06885at 1070.433 kb on + strand, within SGL_RS06885at 1070.484 kb on + strand, within SGL_RS06885at 1070.484 kb on + strand, within SGL_RS06885at 1070.503 kb on + strand, within SGL_RS06885at 1070.517 kb on + strand, within SGL_RS06885at 1070.564 kb on + strand, within SGL_RS06885

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,069,146 + +0.0
1,069,261 + SGL_RS06880 0.19 +2.6
1,069,261 + SGL_RS06880 0.19 +2.0
1,069,363 + SGL_RS06880 0.43 +1.6
1,069,531 - SGL_RS06880 0.82 +1.9
1,069,799 + +0.1
1,069,846 + +1.0
1,069,846 + -0.5
1,069,985 + SGL_RS06885 0.16 -3.0
1,070,039 - SGL_RS06885 0.18 -0.1
1,070,088 - SGL_RS06885 0.21 -0.8
1,070,114 - SGL_RS06885 0.22 +0.4
1,070,433 + SGL_RS06885 0.38 -0.2
1,070,484 + SGL_RS06885 0.40 +0.1
1,070,484 + SGL_RS06885 0.40 -0.0
1,070,503 + SGL_RS06885 0.41 +0.0
1,070,517 + SGL_RS06885 0.42 -0.7
1,070,564 + SGL_RS06885 0.44 +0.0

Or see this region's nucleotide sequence