Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS20135

Experiment: high light; bubbling

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	high light; bubbling
1,169,874	+		SGL_RS07340	0.72	+0.7
1,169,969	+		SGL_RS07340	0.80	-0.5
1,170,039	+		SGL_RS07340	0.87	+1.0
1,170,299	-				-0.2
1,170,354	+				+1.1
1,170,472	+				-0.7
1,170,553	+				-0.8
1,170,553	+				+0.4
1,170,561	-				-0.7
1,170,561	-				+0.9
1,170,586	-				+1.3
1,170,591	-				-0.3
1,170,658	-				+0.2
1,170,671	+				+2.3
1,170,863	+				+3.4
1,170,925	-				+0.1
1,170,968	-				+0.7
1,171,024	+				-1.0
1,171,061	+				+1.0
1,171,065	+				+0.2
1,171,114	+				-0.3
1,171,332	+				-1.2
1,171,463	-				+0.0
1,171,673	-		SGL_RS20135	0.12	-1.5
1,171,734	+		SGL_RS20135	0.13	+0.4
1,171,734	+		SGL_RS20135	0.13	-0.9
1,171,734	+		SGL_RS20135	0.13	-0.5
1,171,742	-		SGL_RS20135	0.13	-1.2
1,171,742	-		SGL_RS20135	0.13	+0.1
1,171,742	-		SGL_RS20135	0.13	-0.0
1,171,791	+		SGL_RS20135	0.13	-0.4
1,171,821	-		SGL_RS20135	0.14	+1.7
1,171,822	+		SGL_RS20135	0.14	-1.2
1,171,914	+		SGL_RS20135	0.15	-0.3
1,171,979	-		SGL_RS20135	0.16	+1.2
1,172,161	-		SGL_RS20135	0.18	+1.3
1,172,215	-		SGL_RS20135	0.18	-1.0
1,172,219	+		SGL_RS20135	0.18	-1.1
1,172,224	+		SGL_RS20135	0.18	-1.2
1,172,282	-		SGL_RS20135	0.19	-0.3
1,172,311	+		SGL_RS20135	0.19	-2.9
1,172,506	-		SGL_RS20135	0.21	+0.9
1,172,507	-		SGL_RS20135	0.21	-1.7
1,172,530	+		SGL_RS20135	0.22	+0.7
1,172,566	+		SGL_RS20135	0.22	+0.3
1,172,566	+		SGL_RS20135	0.22	-1.7
1,172,574	-		SGL_RS20135	0.22	+0.2
1,172,594	-		SGL_RS20135	0.22	-0.0
1,172,614	+		SGL_RS20135	0.23	-0.4
1,172,741	-		SGL_RS20135	0.24	+0.5
1,172,753	+		SGL_RS20135	0.24	-1.2
1,172,758	+		SGL_RS20135	0.24	-0.0
1,173,070	-		SGL_RS20135	0.28	-0.1
1,173,115	+		SGL_RS20135	0.28	+1.5
1,173,124	-		SGL_RS20135	0.28	-1.1
1,173,280	+		SGL_RS20135	0.30	+1.1
1,173,398	-		SGL_RS20135	0.31	-0.6
1,173,568	+		SGL_RS20135	0.33	-0.4
1,173,707	+		SGL_RS20135	0.35	-1.5
1,173,744	-		SGL_RS20135	0.35	-0.4
1,173,790	-		SGL_RS20135	0.36	+0.6
1,173,986	+		SGL_RS20135	0.38	+1.4
1,174,072	+		SGL_RS20135	0.39	-0.8
1,174,150	+		SGL_RS20135	0.40	-0.6
1,174,150	+		SGL_RS20135	0.40	-0.9
1,174,156	+		SGL_RS20135	0.40	-1.6
1,174,158	-		SGL_RS20135	0.40	-2.1
1,174,348	+		SGL_RS20135	0.42	+0.9
1,174,356	-		SGL_RS20135	0.42	-2.0
1,174,438	+		SGL_RS20135	0.43	-0.4
1,174,459	+		SGL_RS20135	0.43	-0.2
1,174,503	+		SGL_RS20135	0.43	-1.3
1,174,560	-		SGL_RS20135	0.44	-0.4
1,174,572	+		SGL_RS20135	0.44	+0.5
1,174,702	+		SGL_RS20135	0.46	+0.2
1,174,768	+		SGL_RS20135	0.46	+1.1
1,174,770	+		SGL_RS20135	0.46	+1.6
1,174,770	+		SGL_RS20135	0.46	+0.8
1,174,770	+		SGL_RS20135	0.46	-1.3
1,174,913	-		SGL_RS20135	0.48	+0.7
1,174,927	+		SGL_RS20135	0.48	+0.7
1,174,927	+		SGL_RS20135	0.48	-0.5
1,174,987	+		SGL_RS20135	0.49	-0.2
1,175,040	+		SGL_RS20135	0.49	-1.9
1,175,040	+		SGL_RS20135	0.49	-0.7
1,175,063	+		SGL_RS20135	0.50	+0.8
1,175,071	-		SGL_RS20135	0.50	+0.4
1,175,266	+		SGL_RS20135	0.52	+1.1
1,175,566	+		SGL_RS20135	0.55	+0.4
1,175,594	-		SGL_RS20135	0.55	+0.4
1,175,663	+		SGL_RS20135	0.56	+0.3
1,175,696	-		SGL_RS20135	0.57	+0.4
1,175,720	-		SGL_RS20135	0.57	-0.6
1,175,847	+		SGL_RS20135	0.58	-0.2
1,175,891	+		SGL_RS20135	0.59	+0.0
1,175,891	+		SGL_RS20135	0.59	-0.2
1,175,948	+		SGL_RS20135	0.59	+0.8
1,175,948	+		SGL_RS20135	0.59	-1.0
1,175,956	-		SGL_RS20135	0.59	+0.0
1,175,956	-		SGL_RS20135	0.59	-1.2
1,175,989	-		SGL_RS20135	0.60	+0.8
1,176,140	+		SGL_RS20135	0.62	-0.4
1,176,140	+		SGL_RS20135	0.62	+0.7
1,176,140	+		SGL_RS20135	0.62	-0.6
1,176,148	-		SGL_RS20135	0.62	-0.7
1,176,191	-		SGL_RS20135	0.62	+1.7
1,176,210	+		SGL_RS20135	0.62	-0.1
1,176,387	-		SGL_RS20135	0.64	-0.2
1,176,391	+		SGL_RS20135	0.64	-0.2
1,176,406	-		SGL_RS20135	0.64	-0.5
1,176,479	-		SGL_RS20135	0.65	-0.4
1,176,489	-		SGL_RS20135	0.65	-1.0
1,176,628	+		SGL_RS20135	0.67	-0.9
1,176,685	+		SGL_RS20135	0.68	+0.6
1,176,685	+		SGL_RS20135	0.68	-0.4
1,176,699	-		SGL_RS20135	0.68	-1.1
1,176,836	+		SGL_RS20135	0.69	-1.9
1,176,844	-		SGL_RS20135	0.69	-1.7
1,176,903	+		SGL_RS20135	0.70	+0.4
1,176,928	+		SGL_RS20135	0.70	-1.3
1,176,944	+		SGL_RS20135	0.70	-2.3
1,177,206	+		SGL_RS20135	0.73	+0.8
1,177,206	-		SGL_RS20135	0.73	+0.1
1,177,310	-		SGL_RS20135	0.74	-0.8
1,177,655	-		SGL_RS20135	0.78	-1.4
1,177,690	+		SGL_RS20135	0.79	+0.3
1,177,699	-		SGL_RS20135	0.79	-0.3
1,177,826	-		SGL_RS20135	0.80	-1.4
1,177,852	+		SGL_RS20135	0.80	+0.4
1,177,872	-		SGL_RS20135	0.81	+0.3
1,177,915	+		SGL_RS20135	0.81	+0.7
1,177,981	-		SGL_RS20135	0.82	+0.1
1,177,996	-		SGL_RS20135	0.82	-0.8
1,178,008	+		SGL_RS20135	0.82	+1.1
1,178,447	+		SGL_RS20135	0.87	+0.1
1,178,534	+		SGL_RS20135	0.88	-0.3
1,178,576	+		SGL_RS20135	0.88	-1.1
1,178,634	+		SGL_RS20135	0.89	-2.1
1,178,659	+		SGL_RS20135	0.89	-0.2
1,178,659	+		SGL_RS20135	0.89	+0.6
1,178,659	+		SGL_RS20135	0.89	-1.0
1,178,667	-		SGL_RS20135	0.89	-1.0
1,178,667	-		SGL_RS20135	0.89	-0.8
1,178,667	-		SGL_RS20135	0.89	+1.0
1,178,678	+		SGL_RS20135	0.90	-0.8
1,178,686	-		SGL_RS20135	0.90	+1.7
1,178,873	+				+1.5
1,178,950	-				+0.4
1,178,969	-				-0.4
1,179,061	+				+0.4
1,179,431	-				+0.8
1,179,574	+				+1.2
1,179,642	+				+1.5
1,179,766	-				+1.5
1,179,841	-				+1.1
1,180,148	+		SGL_RS07350	0.30	-0.5
1,180,180	+		SGL_RS07350	0.34	+2.2
1,180,207	+		SGL_RS07350	0.38	-0.4
1,180,257	-		SGL_RS07350	0.45	+0.7
1,180,257	-		SGL_RS07350	0.45	-1.1
1,180,272	+		SGL_RS07350	0.47	+0.6
1,180,336	-		SGL_RS07350	0.55	+1.0
1,180,533	+		SGL_RS07350	0.82	-0.2
1,180,557	+		SGL_RS07350	0.85	-2.3