Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS20080

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13695 and SGL_RS20080 are separated by 37 nucleotidesSGL_RS20080 and SGL_RS20085 are separated by 5 nucleotidesSGL_RS20085 and SGL_RS13705 overlap by 4 nucleotides SGL_RS13695: SGL_RS13695 - SIMPL domain-containing protein, at 2,543,004 to 2,543,687 _RS13695 SGL_RS20080: SGL_RS20080 - DUF4335 domain-containing protein, at 2,543,725 to 2,544,018 _RS20080 SGL_RS20085: SGL_RS20085 - DUF4335 domain-containing protein, at 2,544,024 to 2,544,377 _RS20085 SGL_RS13705: SGL_RS13705 - DUF3038 domain-containing protein, at 2,544,374 to 2,544,982 _RS13705 Position (kb) 2543 2544 2545Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2542.741 kb on + strandat 2542.785 kb on + strandat 2542.791 kb on - strandat 2542.793 kb on - strandat 2542.793 kb on - strandat 2542.966 kb on + strandat 2543.041 kb on + strandat 2543.048 kb on + strandat 2543.056 kb on - strandat 2543.116 kb on + strand, within SGL_RS13695at 2543.116 kb on + strand, within SGL_RS13695at 2543.219 kb on - strand, within SGL_RS13695at 2543.253 kb on + strand, within SGL_RS13695at 2543.381 kb on + strand, within SGL_RS13695at 2543.384 kb on - strand, within SGL_RS13695at 2543.393 kb on - strand, within SGL_RS13695at 2543.562 kb on + strand, within SGL_RS13695at 2543.597 kb on - strand, within SGL_RS13695at 2543.598 kb on + strand, within SGL_RS13695at 2543.652 kb on + strandat 2543.722 kb on + strandat 2543.794 kb on - strand, within SGL_RS20080

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,542,741 + -1.9
2,542,785 + -0.1
2,542,791 - -0.3
2,542,793 - -0.9
2,542,793 - -0.3
2,542,966 + -2.6
2,543,041 + -4.4
2,543,048 + -0.7
2,543,056 - -3.7
2,543,116 + SGL_RS13695 0.16 -2.9
2,543,116 + SGL_RS13695 0.16 -3.6
2,543,219 - SGL_RS13695 0.31 -1.3
2,543,253 + SGL_RS13695 0.36 -4.8
2,543,381 + SGL_RS13695 0.55 -4.8
2,543,384 - SGL_RS13695 0.56 -2.3
2,543,393 - SGL_RS13695 0.57 -4.0
2,543,562 + SGL_RS13695 0.82 -5.4
2,543,597 - SGL_RS13695 0.87 -3.7
2,543,598 + SGL_RS13695 0.87 -3.1
2,543,652 + -3.0
2,543,722 + -0.4
2,543,794 - SGL_RS20080 0.23 -3.4

Or see this region's nucleotide sequence