Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19005

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13285 and SGL_RS13290 are separated by 151 nucleotidesSGL_RS13290 and SGL_RS19005 are separated by 98 nucleotidesSGL_RS19005 and SGL_RS13295 are separated by 243 nucleotidesSGL_RS13295 and SGL_RS13300 are separated by 72 nucleotides SGL_RS13285: SGL_RS13285 - Sll0314/Alr1548 family TPR repeat-containing protein, at 2,446,395 to 2,447,339 _RS13285 SGL_RS13290: SGL_RS13290 - energy-coupling factor ABC transporter ATP-binding protein, at 2,447,491 to 2,448,123 _RS13290 SGL_RS19005: SGL_RS19005 - 30S ribosomal protein S21, at 2,448,222 to 2,448,404 _RS19005 SGL_RS13295: SGL_RS13295 - 5S ribosomal RNA, at 2,448,648 to 2,448,765 _RS13295 SGL_RS13300: SGL_RS13300 - 23S ribosomal RNA, at 2,448,838 to 2,451,721 _RS13300 Position (kb) 2448 2449Strain fitness (log2 ratio) -1 0 1at 2447.671 kb on - strand, within SGL_RS13290at 2447.831 kb on + strand, within SGL_RS13290at 2447.970 kb on - strand, within SGL_RS13290at 2448.533 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,447,671 - SGL_RS13290 0.28 +0.1
2,447,831 + SGL_RS13290 0.54 +0.3
2,447,970 - SGL_RS13290 0.76 +0.3
2,448,533 + -0.4

Or see this region's nucleotide sequence