Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18225 and SGL_RS18230 are separated by 108 nucleotides SGL_RS18230 and SGL_RS18235 are separated by 113 nucleotides SGL_RS18235 and SGL_RS18240 are separated by 85 nucleotides SGL_RS18240 and SGL_RS18245 are separated by 12 nucleotides
SGL_RS18225: SGL_RS18225 - cofactor assembly of complex C subunit B, at 3,538,842 to 3,539,387
_RS18225
SGL_RS18230: SGL_RS18230 - DUF2993 domain-containing protein, at 3,539,496 to 3,540,212
_RS18230
SGL_RS18235: SGL_RS18235 - NAD-dependent epimerase/dehydratase, at 3,540,326 to 3,541,258
_RS18235
SGL_RS18240: SGL_RS18240 - ABC transporter ATP-binding protein, at 3,541,344 to 3,542,108
_RS18240
SGL_RS18245: SGL_RS18245 - ABC transporter permease, at 3,542,121 to 3,542,936
_RS18245
Position (kb) 3540
3541
3542 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 3539.632 kb on + strand, within SGL_RS18230 at 3539.647 kb on - strand, within SGL_RS18230 at 3539.997 kb on + strand, within SGL_RS18230 at 3540.041 kb on - strand, within SGL_RS18230 at 3540.447 kb on + strand, within SGL_RS18235 at 3540.752 kb on + strand, within SGL_RS18235
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 3,539,632 + SGL_RS18230 0.19 -2.6 3,539,647 - SGL_RS18230 0.21 -2.2 3,539,997 + SGL_RS18230 0.70 -4.2 3,540,041 - SGL_RS18230 0.76 -1.0 3,540,447 + SGL_RS18235 0.13 +0.7 3,540,752 + SGL_RS18235 0.46 +1.0
Or see this region's nucleotide sequence