Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18090

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18085 and SGL_RS18090 are separated by 360 nucleotidesSGL_RS18090 and SGL_RS18095 are separated by 28 nucleotidesSGL_RS18095 and SGL_RS18100 are separated by 121 nucleotides SGL_RS18085: SGL_RS18085 - molecular chaperone HtpG, at 3,514,232 to 3,516,208 _RS18085 SGL_RS18090: SGL_RS18090 - glucose-1-phosphate adenylyltransferase, at 3,516,569 to 3,517,858 _RS18090 SGL_RS18095: SGL_RS18095 - TIGR03943 family protein, at 3,517,887 to 3,518,735 _RS18095 SGL_RS18100: SGL_RS18100 - SH3 domain-containing protein, at 3,518,857 to 3,519,312 _RS18100 Position (kb) 3516 3517 3518Strain fitness (log2 ratio) -3 -2 -1 0 1at 3515.653 kb on - strand, within SGL_RS18085at 3515.688 kb on + strand, within SGL_RS18085at 3515.693 kb on + strand, within SGL_RS18085at 3515.694 kb on - strand, within SGL_RS18085at 3515.694 kb on - strand, within SGL_RS18085at 3515.734 kb on + strand, within SGL_RS18085at 3515.768 kb on - strand, within SGL_RS18085at 3515.785 kb on + strand, within SGL_RS18085at 3515.837 kb on + strand, within SGL_RS18085at 3516.292 kb on - strandat 3516.434 kb on + strandat 3516.555 kb on + strandat 3516.590 kb on + strandat 3516.781 kb on - strand, within SGL_RS18090at 3517.374 kb on + strand, within SGL_RS18090at 3517.955 kb on - strandat 3517.982 kb on - strand, within SGL_RS18095at 3518.184 kb on + strand, within SGL_RS18095at 3518.250 kb on - strand, within SGL_RS18095at 3518.395 kb on + strand, within SGL_RS18095at 3518.519 kb on + strand, within SGL_RS18095at 3518.527 kb on - strand, within SGL_RS18095at 3518.599 kb on + strand, within SGL_RS18095at 3518.616 kb on + strand, within SGL_RS18095at 3518.624 kb on - strand, within SGL_RS18095at 3518.722 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,515,653 - SGL_RS18085 0.72 +0.5
3,515,688 + SGL_RS18085 0.74 -2.2
3,515,693 + SGL_RS18085 0.74 +0.2
3,515,694 - SGL_RS18085 0.74 +0.7
3,515,694 - SGL_RS18085 0.74 -0.8
3,515,734 + SGL_RS18085 0.76 +1.2
3,515,768 - SGL_RS18085 0.78 -1.2
3,515,785 + SGL_RS18085 0.79 +0.5
3,515,837 + SGL_RS18085 0.81 +0.5
3,516,292 - -0.1
3,516,434 + +0.1
3,516,555 + +0.2
3,516,590 + -0.1
3,516,781 - SGL_RS18090 0.16 +0.2
3,517,374 + SGL_RS18090 0.62 -0.1
3,517,955 - -0.9
3,517,982 - SGL_RS18095 0.11 -3.3
3,518,184 + SGL_RS18095 0.35 -2.9
3,518,250 - SGL_RS18095 0.43 -2.9
3,518,395 + SGL_RS18095 0.60 +0.2
3,518,519 + SGL_RS18095 0.74 -2.1
3,518,527 - SGL_RS18095 0.75 -2.7
3,518,599 + SGL_RS18095 0.84 -1.1
3,518,616 + SGL_RS18095 0.86 -3.0
3,518,624 - SGL_RS18095 0.87 -2.2
3,518,722 - -1.5

Or see this region's nucleotide sequence