Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17820 and SGL_RS17825 are separated by 90 nucleotides SGL_RS17825 and SGL_RS17830 are separated by 184 nucleotides SGL_RS17830 and SGL_RS17835 are separated by 383 nucleotides
SGL_RS17820: SGL_RS17820 - photosystem I reaction center protein subunit XI, at 3,457,459 to 3,457,932
_RS17820
SGL_RS17825: SGL_RS17825 - photosystem I reaction center subunit VIII, at 3,458,023 to 3,458,145
_RS17825
SGL_RS17830: SGL_RS17830 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase, at 3,458,330 to 3,459,397
_RS17830
SGL_RS17835: SGL_RS17835 - diguanylate cyclase, at 3,459,781 to 3,460,608
_RS17835
Position (kb)
3458
3459
3460 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3457.469 kb on - strand at 3457.494 kb on + strand at 3457.599 kb on + strand, within SGL_RS17820 at 3457.711 kb on + strand, within SGL_RS17820 at 3458.121 kb on + strand, within SGL_RS17825 at 3458.204 kb on - strand at 3458.296 kb on + strand at 3459.410 kb on - strand at 3459.525 kb on + strand at 3459.636 kb on - strand at 3459.638 kb on + strand at 3460.125 kb on + strand, within SGL_RS17835 at 3460.190 kb on - strand, within SGL_RS17835 at 3460.380 kb on + strand, within SGL_RS17835
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 3,457,469 - +0.7 3,457,494 + +1.0 3,457,599 + SGL_RS17820 0.30 -0.7 3,457,711 + SGL_RS17820 0.53 +0.7 3,458,121 + SGL_RS17825 0.80 -0.9 3,458,204 - -0.8 3,458,296 + -3.3 3,459,410 - -0.3 3,459,525 + +0.6 3,459,636 - -0.5 3,459,638 + -0.7 3,460,125 + SGL_RS17835 0.42 +0.5 3,460,190 - SGL_RS17835 0.49 -0.2 3,460,380 + SGL_RS17835 0.72 -0.4
Or see this region's nucleotide sequence