Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17390

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17385 and SGL_RS17390 are separated by 152 nucleotidesSGL_RS17390 and SGL_RS17395 are separated by 170 nucleotides SGL_RS17385: SGL_RS17385 - 2-hydroxyacid dehydrogenase, at 3,359,578 to 3,360,579 _RS17385 SGL_RS17390: SGL_RS17390 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 3,360,732 to 3,361,886 _RS17390 SGL_RS17395: SGL_RS17395 - helix-turn-helix domain-containing protein, at 3,362,057 to 3,363,166 _RS17395 Position (kb) 3360 3361 3362Strain fitness (log2 ratio) -1 0 1 2at 3359.917 kb on - strand, within SGL_RS17385at 3360.249 kb on - strand, within SGL_RS17385at 3360.823 kb on + strandat 3361.573 kb on - strand, within SGL_RS17390at 3362.168 kb on - strand, within SGL_RS17395at 3362.336 kb on - strand, within SGL_RS17395at 3362.420 kb on + strand, within SGL_RS17395at 3362.428 kb on - strand, within SGL_RS17395at 3362.428 kb on - strand, within SGL_RS17395at 3362.433 kb on - strand, within SGL_RS17395at 3362.508 kb on + strand, within SGL_RS17395at 3362.538 kb on + strand, within SGL_RS17395at 3362.546 kb on - strand, within SGL_RS17395at 3362.686 kb on - strand, within SGL_RS17395at 3362.825 kb on - strand, within SGL_RS17395

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,359,917 - SGL_RS17385 0.34 -0.9
3,360,249 - SGL_RS17385 0.67 +0.6
3,360,823 + +2.0
3,361,573 - SGL_RS17390 0.73 +1.0
3,362,168 - SGL_RS17395 0.10 +2.2
3,362,336 - SGL_RS17395 0.25 +0.6
3,362,420 + SGL_RS17395 0.33 +0.1
3,362,428 - SGL_RS17395 0.33 +0.7
3,362,428 - SGL_RS17395 0.33 +1.5
3,362,433 - SGL_RS17395 0.34 -1.2
3,362,508 + SGL_RS17395 0.41 -0.2
3,362,538 + SGL_RS17395 0.43 +1.9
3,362,546 - SGL_RS17395 0.44 -0.2
3,362,686 - SGL_RS17395 0.57 +1.5
3,362,825 - SGL_RS17395 0.69 -0.2

Or see this region's nucleotide sequence