Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16945 and SGL_RS16950 are separated by 21 nucleotides SGL_RS16950 and SGL_RS16955 are separated by 249 nucleotides
SGL_RS16945: SGL_RS16945 - DUF3854 domain-containing protein, at 3,254,599 to 3,257,670
_RS16945
SGL_RS16950: SGL_RS16950 - phosphoketolase, at 3,257,692 to 3,259,887
_RS16950
SGL_RS16955: SGL_RS16955 - site-2 protease family protein, at 3,260,137 to 3,261,276
_RS16955
Position (kb)
3257
3258
3259
3260 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 3256.730 kb on - strand, within SGL_RS16945 at 3256.928 kb on - strand, within SGL_RS16945 at 3256.932 kb on + strand, within SGL_RS16945 at 3256.973 kb on - strand, within SGL_RS16945 at 3257.015 kb on + strand, within SGL_RS16945 at 3257.167 kb on + strand, within SGL_RS16945 at 3257.410 kb on - strand at 3257.613 kb on + strand at 3257.649 kb on + strand at 3257.824 kb on + strand at 3258.000 kb on + strand, within SGL_RS16950 at 3258.248 kb on - strand, within SGL_RS16950 at 3258.343 kb on + strand, within SGL_RS16950 at 3258.361 kb on + strand, within SGL_RS16950 at 3258.386 kb on - strand, within SGL_RS16950 at 3258.401 kb on - strand, within SGL_RS16950 at 3258.423 kb on + strand, within SGL_RS16950 at 3258.522 kb on - strand, within SGL_RS16950 at 3258.522 kb on - strand, within SGL_RS16950 at 3258.552 kb on - strand, within SGL_RS16950 at 3258.625 kb on - strand, within SGL_RS16950 at 3258.940 kb on - strand, within SGL_RS16950 at 3259.198 kb on + strand, within SGL_RS16950 at 3259.470 kb on + strand, within SGL_RS16950 at 3259.639 kb on - strand, within SGL_RS16950 at 3259.772 kb on + strand at 3259.876 kb on + strand at 3260.042 kb on - strand at 3260.042 kb on - strand at 3260.055 kb on - strand at 3260.167 kb on - strand at 3260.357 kb on + strand, within SGL_RS16955 at 3260.487 kb on + strand, within SGL_RS16955 at 3260.623 kb on - strand, within SGL_RS16955 at 3260.747 kb on - strand, within SGL_RS16955 at 3260.754 kb on + strand, within SGL_RS16955 at 3260.772 kb on - strand, within SGL_RS16955 at 3260.794 kb on - strand, within SGL_RS16955
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 3,256,730 - SGL_RS16945 0.69 +4.1 3,256,928 - SGL_RS16945 0.76 +3.5 3,256,932 + SGL_RS16945 0.76 +5.0 3,256,973 - SGL_RS16945 0.77 +4.5 3,257,015 + SGL_RS16945 0.79 +2.3 3,257,167 + SGL_RS16945 0.84 +4.0 3,257,410 - +3.1 3,257,613 + -2.9 3,257,649 + -0.2 3,257,824 + -3.2 3,258,000 + SGL_RS16950 0.14 -0.0 3,258,248 - SGL_RS16950 0.25 -2.1 3,258,343 + SGL_RS16950 0.30 -3.6 3,258,361 + SGL_RS16950 0.30 -1.5 3,258,386 - SGL_RS16950 0.32 -2.8 3,258,401 - SGL_RS16950 0.32 -3.8 3,258,423 + SGL_RS16950 0.33 -2.3 3,258,522 - SGL_RS16950 0.38 -1.3 3,258,522 - SGL_RS16950 0.38 -2.0 3,258,552 - SGL_RS16950 0.39 -1.8 3,258,625 - SGL_RS16950 0.42 -0.2 3,258,940 - SGL_RS16950 0.57 -2.8 3,259,198 + SGL_RS16950 0.69 -2.2 3,259,470 + SGL_RS16950 0.81 -2.5 3,259,639 - SGL_RS16950 0.89 -2.3 3,259,772 + -0.8 3,259,876 + -2.9 3,260,042 - -1.4 3,260,042 - -0.4 3,260,055 - -1.4 3,260,167 - -0.4 3,260,357 + SGL_RS16955 0.19 -2.1 3,260,487 + SGL_RS16955 0.31 -1.3 3,260,623 - SGL_RS16955 0.43 -2.4 3,260,747 - SGL_RS16955 0.54 -1.5 3,260,754 + SGL_RS16955 0.54 -2.4 3,260,772 - SGL_RS16955 0.56 -2.0 3,260,794 - SGL_RS16955 0.58 -1.1
Or see this region's nucleotide sequence