Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16850

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS16835 and SGL_RS16840 are separated by 22 nucleotidesSGL_RS16840 and SGL_RS16845 overlap by 4 nucleotidesSGL_RS16845 and SGL_RS16850 are separated by 6 nucleotidesSGL_RS16850 and SGL_RS16855 are separated by 242 nucleotidesSGL_RS16855 and SGL_RS16860 are separated by 65 nucleotides SGL_RS16835: SGL_RS16835 - ATP-binding protein, at 3,231,569 to 3,232,879 _RS16835 SGL_RS16840: SGL_RS16840 - TMEM165/GDT1 family protein, at 3,232,902 to 3,233,180 _RS16840 SGL_RS16845: SGL_RS16845 - ATP phosphoribosyltransferase, at 3,233,177 to 3,233,809 _RS16845 SGL_RS16850: SGL_RS16850 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 3,233,816 to 3,235,186 _RS16850 SGL_RS16855: SGL_RS16855 - DUF4327 family protein, at 3,235,429 to 3,235,680 _RS16855 SGL_RS16860: SGL_RS16860 - small ribosomal subunit biogenesis GTPase RsgA, at 3,235,746 to 3,236,855 _RS16860 Position (kb) 3233 3234 3235 3236Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3232.869 kb on - strandat 3232.869 kb on - strandat 3233.082 kb on - strand, within SGL_RS16840at 3233.618 kb on - strand, within SGL_RS16845at 3234.443 kb on + strand, within SGL_RS16850at 3235.295 kb on + strandat 3235.399 kb on + strandat 3235.409 kb on + strandat 3235.491 kb on + strand, within SGL_RS16855at 3235.519 kb on + strand, within SGL_RS16855at 3235.522 kb on - strand, within SGL_RS16855at 3235.524 kb on - strand, within SGL_RS16855at 3235.587 kb on + strand, within SGL_RS16855at 3235.647 kb on + strand, within SGL_RS16855at 3235.989 kb on + strand, within SGL_RS16860at 3235.997 kb on + strand, within SGL_RS16860at 3235.997 kb on + strand, within SGL_RS16860at 3236.005 kb on - strand, within SGL_RS16860at 3236.005 kb on - strand, within SGL_RS16860

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
3,232,869 - -0.8
3,232,869 - -0.8
3,233,082 - SGL_RS16840 0.65 -5.2
3,233,618 - SGL_RS16845 0.70 +2.0
3,234,443 + SGL_RS16850 0.46 -0.8
3,235,295 + -0.1
3,235,399 + +0.3
3,235,409 + -0.6
3,235,491 + SGL_RS16855 0.25 -0.1
3,235,519 + SGL_RS16855 0.36 -2.8
3,235,522 - SGL_RS16855 0.37 -1.6
3,235,524 - SGL_RS16855 0.38 -0.3
3,235,587 + SGL_RS16855 0.63 -1.0
3,235,647 + SGL_RS16855 0.87 +0.5
3,235,989 + SGL_RS16860 0.22 -1.6
3,235,997 + SGL_RS16860 0.23 -4.3
3,235,997 + SGL_RS16860 0.23 -1.6
3,236,005 - SGL_RS16860 0.23 -1.8
3,236,005 - SGL_RS16860 0.23 -2.5

Or see this region's nucleotide sequence