Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16670

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16665 and SGL_RS16670 are separated by 240 nucleotidesSGL_RS16670 and SGL_RS16675 are separated by 106 nucleotides SGL_RS16665: SGL_RS16665 - transglycosylase SLT domain-containing protein, at 3,194,023 to 3,196,542 _RS16665 SGL_RS16670: SGL_RS16670 - DUF5942 domain-containing protein, at 3,196,783 to 3,198,624 _RS16670 SGL_RS16675: SGL_RS16675 - uroporphyrinogen decarboxylase, at 3,198,731 to 3,199,783 _RS16675 Position (kb) 3196 3197 3198 3199Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3195.861 kb on - strand, within SGL_RS16665at 3195.879 kb on - strand, within SGL_RS16665at 3196.123 kb on + strand, within SGL_RS16665at 3196.211 kb on - strand, within SGL_RS16665at 3196.272 kb on + strand, within SGL_RS16665at 3196.558 kb on + strandat 3196.558 kb on + strandat 3197.020 kb on + strand, within SGL_RS16670at 3197.119 kb on - strand, within SGL_RS16670at 3197.283 kb on - strand, within SGL_RS16670at 3197.383 kb on - strand, within SGL_RS16670at 3197.397 kb on + strand, within SGL_RS16670at 3197.720 kb on - strand, within SGL_RS16670at 3197.720 kb on - strand, within SGL_RS16670at 3197.730 kb on + strand, within SGL_RS16670at 3197.937 kb on + strand, within SGL_RS16670at 3197.971 kb on + strand, within SGL_RS16670at 3197.986 kb on + strand, within SGL_RS16670at 3198.027 kb on - strand, within SGL_RS16670at 3198.172 kb on + strand, within SGL_RS16670at 3198.180 kb on - strand, within SGL_RS16670at 3198.180 kb on - strand, within SGL_RS16670at 3198.187 kb on - strand, within SGL_RS16670at 3198.253 kb on + strand, within SGL_RS16670at 3198.351 kb on + strand, within SGL_RS16670at 3198.481 kb on - strandat 3198.582 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,195,861 - SGL_RS16665 0.73 -4.2
3,195,879 - SGL_RS16665 0.74 -3.1
3,196,123 + SGL_RS16665 0.83 -4.5
3,196,211 - SGL_RS16665 0.87 -3.6
3,196,272 + SGL_RS16665 0.89 -3.9
3,196,558 + -0.5
3,196,558 + -0.4
3,197,020 + SGL_RS16670 0.13 -4.0
3,197,119 - SGL_RS16670 0.18 -3.5
3,197,283 - SGL_RS16670 0.27 -4.0
3,197,383 - SGL_RS16670 0.33 -3.9
3,197,397 + SGL_RS16670 0.33 -2.9
3,197,720 - SGL_RS16670 0.51 -3.5
3,197,720 - SGL_RS16670 0.51 -3.6
3,197,730 + SGL_RS16670 0.51 -2.6
3,197,937 + SGL_RS16670 0.63 -3.6
3,197,971 + SGL_RS16670 0.64 -5.2
3,197,986 + SGL_RS16670 0.65 -3.8
3,198,027 - SGL_RS16670 0.68 -2.4
3,198,172 + SGL_RS16670 0.75 -1.4
3,198,180 - SGL_RS16670 0.76 -5.6
3,198,180 - SGL_RS16670 0.76 -3.5
3,198,187 - SGL_RS16670 0.76 -4.3
3,198,253 + SGL_RS16670 0.80 -3.8
3,198,351 + SGL_RS16670 0.85 -2.0
3,198,481 - -3.2
3,198,582 - -0.6

Or see this region's nucleotide sequence