Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16535

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16530 and SGL_RS16535 are separated by 12 nucleotidesSGL_RS16535 and SGL_RS16540 are separated by 62 nucleotides SGL_RS16530: SGL_RS16530 - pyridoxal phosphate-dependent aminotransferase, at 3,160,723 to 3,161,886 _RS16530 SGL_RS16535: SGL_RS16535 - D-alanyl-D-alanine carboxypeptidase family protein, at 3,161,899 to 3,162,675 _RS16535 SGL_RS16540: SGL_RS16540 - carotene isomerase, at 3,162,738 to 3,164,243 _RS16540 Position (kb) 3161 3162 3163Strain fitness (log2 ratio) -1 0 1 2 3 4at 3161.011 kb on - strand, within SGL_RS16530at 3161.028 kb on + strand, within SGL_RS16530at 3161.046 kb on - strand, within SGL_RS16530at 3161.130 kb on + strand, within SGL_RS16530at 3161.187 kb on + strand, within SGL_RS16530at 3161.318 kb on - strand, within SGL_RS16530at 3161.379 kb on + strand, within SGL_RS16530at 3161.412 kb on - strand, within SGL_RS16530at 3161.430 kb on - strand, within SGL_RS16530at 3161.430 kb on - strand, within SGL_RS16530at 3161.501 kb on + strand, within SGL_RS16530at 3161.647 kb on - strand, within SGL_RS16530at 3161.682 kb on - strand, within SGL_RS16530at 3161.776 kb on - strandat 3161.804 kb on + strandat 3161.855 kb on + strandat 3162.166 kb on + strand, within SGL_RS16535at 3162.407 kb on - strand, within SGL_RS16535at 3162.474 kb on + strand, within SGL_RS16535at 3162.491 kb on + strand, within SGL_RS16535at 3162.491 kb on + strand, within SGL_RS16535at 3162.499 kb on - strand, within SGL_RS16535at 3162.567 kb on + strand, within SGL_RS16535at 3162.574 kb on + strand, within SGL_RS16535at 3162.575 kb on - strand, within SGL_RS16535at 3162.801 kb on + strandat 3162.809 kb on - strandat 3162.919 kb on - strand, within SGL_RS16540at 3162.950 kb on + strand, within SGL_RS16540at 3162.978 kb on + strand, within SGL_RS16540at 3163.111 kb on - strand, within SGL_RS16540at 3163.325 kb on - strand, within SGL_RS16540at 3163.389 kb on - strand, within SGL_RS16540at 3163.554 kb on - strand, within SGL_RS16540at 3163.622 kb on - strand, within SGL_RS16540

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,161,011 - SGL_RS16530 0.25 -0.5
3,161,028 + SGL_RS16530 0.26 -1.1
3,161,046 - SGL_RS16530 0.28 -0.6
3,161,130 + SGL_RS16530 0.35 -0.3
3,161,187 + SGL_RS16530 0.40 -1.1
3,161,318 - SGL_RS16530 0.51 -0.7
3,161,379 + SGL_RS16530 0.56 -0.1
3,161,412 - SGL_RS16530 0.59 -1.6
3,161,430 - SGL_RS16530 0.61 -1.3
3,161,430 - SGL_RS16530 0.61 -1.2
3,161,501 + SGL_RS16530 0.67 +0.3
3,161,647 - SGL_RS16530 0.79 -0.0
3,161,682 - SGL_RS16530 0.82 -0.5
3,161,776 - -0.2
3,161,804 + +0.4
3,161,855 + +0.1
3,162,166 + SGL_RS16535 0.34 +1.6
3,162,407 - SGL_RS16535 0.65 +1.2
3,162,474 + SGL_RS16535 0.74 +1.2
3,162,491 + SGL_RS16535 0.76 +1.5
3,162,491 + SGL_RS16535 0.76 -0.2
3,162,499 - SGL_RS16535 0.77 +2.5
3,162,567 + SGL_RS16535 0.86 +0.1
3,162,574 + SGL_RS16535 0.87 +1.1
3,162,575 - SGL_RS16535 0.87 +1.5
3,162,801 + +3.8
3,162,809 - +3.7
3,162,919 - SGL_RS16540 0.12 +3.4
3,162,950 + SGL_RS16540 0.14 +2.9
3,162,978 + SGL_RS16540 0.16 +1.9
3,163,111 - SGL_RS16540 0.25 +1.6
3,163,325 - SGL_RS16540 0.39 +3.0
3,163,389 - SGL_RS16540 0.43 +3.2
3,163,554 - SGL_RS16540 0.54 +3.7
3,163,622 - SGL_RS16540 0.59 +2.9

Or see this region's nucleotide sequence