Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16530 and SGL_RS16535 are separated by 12 nucleotides SGL_RS16535 and SGL_RS16540 are separated by 62 nucleotides
SGL_RS16530: SGL_RS16530 - pyridoxal phosphate-dependent aminotransferase, at 3,160,723 to 3,161,886
_RS16530
SGL_RS16535: SGL_RS16535 - D-alanyl-D-alanine carboxypeptidase family protein, at 3,161,899 to 3,162,675
_RS16535
SGL_RS16540: SGL_RS16540 - carotene isomerase, at 3,162,738 to 3,164,243
_RS16540
Position (kb)
3161
3162
3163 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3161.011 kb on - strand, within SGL_RS16530 at 3161.028 kb on + strand, within SGL_RS16530 at 3161.046 kb on - strand, within SGL_RS16530 at 3161.130 kb on + strand, within SGL_RS16530 at 3161.187 kb on + strand, within SGL_RS16530 at 3161.318 kb on - strand, within SGL_RS16530 at 3161.379 kb on + strand, within SGL_RS16530 at 3161.412 kb on - strand, within SGL_RS16530 at 3161.430 kb on - strand, within SGL_RS16530 at 3161.430 kb on - strand, within SGL_RS16530 at 3161.501 kb on + strand, within SGL_RS16530 at 3161.647 kb on - strand, within SGL_RS16530 at 3161.682 kb on - strand, within SGL_RS16530 at 3161.776 kb on - strand at 3161.804 kb on + strand at 3161.855 kb on + strand at 3162.166 kb on + strand, within SGL_RS16535 at 3162.407 kb on - strand, within SGL_RS16535 at 3162.474 kb on + strand, within SGL_RS16535 at 3162.491 kb on + strand, within SGL_RS16535 at 3162.491 kb on + strand, within SGL_RS16535 at 3162.499 kb on - strand, within SGL_RS16535 at 3162.567 kb on + strand, within SGL_RS16535 at 3162.574 kb on + strand, within SGL_RS16535 at 3162.575 kb on - strand, within SGL_RS16535 at 3162.801 kb on + strand at 3162.809 kb on - strand at 3162.919 kb on - strand, within SGL_RS16540 at 3162.950 kb on + strand, within SGL_RS16540 at 3162.978 kb on + strand, within SGL_RS16540 at 3163.111 kb on - strand, within SGL_RS16540 at 3163.325 kb on - strand, within SGL_RS16540 at 3163.389 kb on - strand, within SGL_RS16540 at 3163.554 kb on - strand, within SGL_RS16540 at 3163.622 kb on - strand, within SGL_RS16540
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 3,161,011 - SGL_RS16530 0.25 -0.5 3,161,028 + SGL_RS16530 0.26 -1.1 3,161,046 - SGL_RS16530 0.28 -0.6 3,161,130 + SGL_RS16530 0.35 -0.3 3,161,187 + SGL_RS16530 0.40 -1.1 3,161,318 - SGL_RS16530 0.51 -0.7 3,161,379 + SGL_RS16530 0.56 -0.1 3,161,412 - SGL_RS16530 0.59 -1.6 3,161,430 - SGL_RS16530 0.61 -1.3 3,161,430 - SGL_RS16530 0.61 -1.2 3,161,501 + SGL_RS16530 0.67 +0.3 3,161,647 - SGL_RS16530 0.79 -0.0 3,161,682 - SGL_RS16530 0.82 -0.5 3,161,776 - -0.2 3,161,804 + +0.4 3,161,855 + +0.1 3,162,166 + SGL_RS16535 0.34 +1.6 3,162,407 - SGL_RS16535 0.65 +1.2 3,162,474 + SGL_RS16535 0.74 +1.2 3,162,491 + SGL_RS16535 0.76 +1.5 3,162,491 + SGL_RS16535 0.76 -0.2 3,162,499 - SGL_RS16535 0.77 +2.5 3,162,567 + SGL_RS16535 0.86 +0.1 3,162,574 + SGL_RS16535 0.87 +1.1 3,162,575 - SGL_RS16535 0.87 +1.5 3,162,801 + +3.8 3,162,809 - +3.7 3,162,919 - SGL_RS16540 0.12 +3.4 3,162,950 + SGL_RS16540 0.14 +2.9 3,162,978 + SGL_RS16540 0.16 +1.9 3,163,111 - SGL_RS16540 0.25 +1.6 3,163,325 - SGL_RS16540 0.39 +3.0 3,163,389 - SGL_RS16540 0.43 +3.2 3,163,554 - SGL_RS16540 0.54 +3.7 3,163,622 - SGL_RS16540 0.59 +2.9
Or see this region's nucleotide sequence