Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16375 and SGL_RS16380 are separated by 16 nucleotides SGL_RS16380 and SGL_RS16385 overlap by 4 nucleotides SGL_RS16385 and SGL_RS16390 are separated by 18 nucleotides SGL_RS16390 and SGL_RS16395 are separated by 112 nucleotides
SGL_RS16375: SGL_RS16375 - hypothetical protein, at 3,119,608 to 3,121,176
_RS16375
SGL_RS16380: SGL_RS16380 - DUF3368 domain-containing protein, at 3,121,193 to 3,121,687
_RS16380
SGL_RS16385: SGL_RS16385 - UPF0175 family protein, at 3,121,684 to 3,121,953
_RS16385
SGL_RS16390: SGL_RS16390 - phospho-N-acetylmuramoyl-pentapeptide- transferase, at 3,121,972 to 3,123,069
_RS16390
SGL_RS16395: SGL_RS16395 - mechanosensitive ion channel family protein, at 3,123,182 to 3,125,035
_RS16395
Position (kb)
3121
3122
3123
3124 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3121.065 kb on + strand at 3121.074 kb on - strand at 3121.096 kb on - strand at 3121.426 kb on + strand, within SGL_RS16380 at 3121.987 kb on - strand at 3121.990 kb on - strand at 3123.312 kb on + strand at 3123.426 kb on + strand, within SGL_RS16395 at 3123.432 kb on - strand, within SGL_RS16395 at 3123.442 kb on - strand, within SGL_RS16395 at 3123.442 kb on - strand, within SGL_RS16395 at 3123.545 kb on - strand, within SGL_RS16395 at 3123.588 kb on + strand, within SGL_RS16395 at 3123.615 kb on + strand, within SGL_RS16395 at 3123.730 kb on - strand, within SGL_RS16395 at 3123.812 kb on - strand, within SGL_RS16395
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 3,121,065 + -0.3 3,121,074 - -0.1 3,121,096 - -1.1 3,121,426 + SGL_RS16380 0.47 -0.7 3,121,987 - +0.4 3,121,990 - -3.0 3,123,312 + +0.6 3,123,426 + SGL_RS16395 0.13 -1.3 3,123,432 - SGL_RS16395 0.13 -0.1 3,123,442 - SGL_RS16395 0.14 +0.2 3,123,442 - SGL_RS16395 0.14 +0.3 3,123,545 - SGL_RS16395 0.20 -0.8 3,123,588 + SGL_RS16395 0.22 -1.3 3,123,615 + SGL_RS16395 0.23 -2.3 3,123,730 - SGL_RS16395 0.30 -0.9 3,123,812 - SGL_RS16395 0.34 +0.4
Or see this region's nucleotide sequence