Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16390

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16375 and SGL_RS16380 are separated by 16 nucleotidesSGL_RS16380 and SGL_RS16385 overlap by 4 nucleotidesSGL_RS16385 and SGL_RS16390 are separated by 18 nucleotidesSGL_RS16390 and SGL_RS16395 are separated by 112 nucleotides SGL_RS16375: SGL_RS16375 - hypothetical protein, at 3,119,608 to 3,121,176 _RS16375 SGL_RS16380: SGL_RS16380 - DUF3368 domain-containing protein, at 3,121,193 to 3,121,687 _RS16380 SGL_RS16385: SGL_RS16385 - UPF0175 family protein, at 3,121,684 to 3,121,953 _RS16385 SGL_RS16390: SGL_RS16390 - phospho-N-acetylmuramoyl-pentapeptide- transferase, at 3,121,972 to 3,123,069 _RS16390 SGL_RS16395: SGL_RS16395 - mechanosensitive ion channel family protein, at 3,123,182 to 3,125,035 _RS16395 Position (kb) 3121 3122 3123 3124Strain fitness (log2 ratio) -3 -2 -1 0 1at 3121.065 kb on + strandat 3121.074 kb on - strandat 3121.096 kb on - strandat 3121.426 kb on + strand, within SGL_RS16380at 3121.987 kb on - strandat 3121.990 kb on - strandat 3123.312 kb on + strandat 3123.426 kb on + strand, within SGL_RS16395at 3123.432 kb on - strand, within SGL_RS16395at 3123.442 kb on - strand, within SGL_RS16395at 3123.442 kb on - strand, within SGL_RS16395at 3123.545 kb on - strand, within SGL_RS16395at 3123.588 kb on + strand, within SGL_RS16395at 3123.615 kb on + strand, within SGL_RS16395at 3123.730 kb on - strand, within SGL_RS16395at 3123.812 kb on - strand, within SGL_RS16395

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,121,065 + -0.3
3,121,074 - -0.1
3,121,096 - -1.1
3,121,426 + SGL_RS16380 0.47 -0.7
3,121,987 - +0.4
3,121,990 - -3.0
3,123,312 + +0.6
3,123,426 + SGL_RS16395 0.13 -1.3
3,123,432 - SGL_RS16395 0.13 -0.1
3,123,442 - SGL_RS16395 0.14 +0.2
3,123,442 - SGL_RS16395 0.14 +0.3
3,123,545 - SGL_RS16395 0.20 -0.8
3,123,588 + SGL_RS16395 0.22 -1.3
3,123,615 + SGL_RS16395 0.23 -2.3
3,123,730 - SGL_RS16395 0.30 -0.9
3,123,812 - SGL_RS16395 0.34 +0.4

Or see this region's nucleotide sequence