Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16280

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16275 and SGL_RS16280 are separated by 107 nucleotidesSGL_RS16280 and SGL_RS16290 are separated by 655 nucleotides SGL_RS16275: SGL_RS16275 - magnesium/cobalt transporter CorA, at 3,101,820 to 3,102,962 _RS16275 SGL_RS16280: SGL_RS16280 - L,D-transpeptidase, at 3,103,070 to 3,103,486 _RS16280 SGL_RS16290: SGL_RS16290 - DNA polymerase I, at 3,104,142 to 3,107,102 _RS16290 Position (kb) 3103 3104Strain fitness (log2 ratio) -1 0 1 2at 3103.090 kb on - strandat 3103.194 kb on + strand, within SGL_RS16280at 3103.273 kb on - strand, within SGL_RS16280at 3103.323 kb on + strand, within SGL_RS16280at 3103.380 kb on + strand, within SGL_RS16280at 3103.511 kb on - strandat 3103.946 kb on - strandat 3104.124 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,103,090 - +2.2
3,103,194 + SGL_RS16280 0.30 +0.9
3,103,273 - SGL_RS16280 0.49 +1.4
3,103,323 + SGL_RS16280 0.61 +1.2
3,103,380 + SGL_RS16280 0.74 +1.0
3,103,511 - +0.5
3,103,946 - +0.0
3,104,124 - -0.6

Or see this region's nucleotide sequence