Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16185

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16180 and SGL_RS16185 are separated by 59 nucleotidesSGL_RS16185 and SGL_RS16190 are separated by 17 nucleotides SGL_RS16180: SGL_RS16180 - ATP-binding cassette domain-containing protein, at 3,078,838 to 3,081,204 _RS16180 SGL_RS16185: SGL_RS16185 - D-alanyl-D-alanine carboxypeptidase family protein, at 3,081,264 to 3,082,133 _RS16185 SGL_RS16190: SGL_RS16190 - protein kinase, at 3,082,151 to 3,083,668 _RS16190 Position (kb) 3081 3082 3083Strain fitness (log2 ratio) -1 0 1 2 3at 3080.337 kb on + strand, within SGL_RS16180at 3080.358 kb on - strand, within SGL_RS16180at 3080.557 kb on + strand, within SGL_RS16180at 3080.730 kb on + strand, within SGL_RS16180at 3080.847 kb on + strand, within SGL_RS16180at 3080.855 kb on - strand, within SGL_RS16180at 3080.918 kb on + strand, within SGL_RS16180at 3081.512 kb on + strand, within SGL_RS16185at 3081.803 kb on + strand, within SGL_RS16185at 3081.813 kb on + strand, within SGL_RS16185at 3082.269 kb on + strandat 3082.280 kb on - strandat 3082.374 kb on + strand, within SGL_RS16190at 3082.412 kb on - strand, within SGL_RS16190at 3082.645 kb on + strand, within SGL_RS16190at 3082.655 kb on + strand, within SGL_RS16190at 3082.873 kb on - strand, within SGL_RS16190at 3082.897 kb on + strand, within SGL_RS16190at 3083.086 kb on - strand, within SGL_RS16190at 3083.092 kb on + strand, within SGL_RS16190

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,080,337 + SGL_RS16180 0.63 -1.6
3,080,358 - SGL_RS16180 0.64 +0.5
3,080,557 + SGL_RS16180 0.73 +1.5
3,080,730 + SGL_RS16180 0.80 +0.8
3,080,847 + SGL_RS16180 0.85 +0.9
3,080,855 - SGL_RS16180 0.85 -0.3
3,080,918 + SGL_RS16180 0.88 +2.8
3,081,512 + SGL_RS16185 0.29 +1.4
3,081,803 + SGL_RS16185 0.62 +1.1
3,081,813 + SGL_RS16185 0.63 +1.5
3,082,269 + +0.3
3,082,280 - -0.2
3,082,374 + SGL_RS16190 0.15 +0.2
3,082,412 - SGL_RS16190 0.17 +0.4
3,082,645 + SGL_RS16190 0.33 +0.6
3,082,655 + SGL_RS16190 0.33 +1.0
3,082,873 - SGL_RS16190 0.48 -0.2
3,082,897 + SGL_RS16190 0.49 -0.8
3,083,086 - SGL_RS16190 0.62 -0.1
3,083,092 + SGL_RS16190 0.62 +1.8

Or see this region's nucleotide sequence