Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15670 and SGL_RS15675 are separated by 120 nucleotides SGL_RS15675 and SGL_RS15680 are separated by 203 nucleotides SGL_RS15680 and SGL_RS15685 are separated by 243 nucleotides
SGL_RS15670: SGL_RS15670 - sodium/glutamate symporter, at 2,964,570 to 2,966,033
_RS15670
SGL_RS15675: SGL_RS15675 - chorismate mutase, at 2,966,154 to 2,966,537
_RS15675
SGL_RS15680: SGL_RS15680 - tetratricopeptide repeat protein, at 2,966,741 to 2,967,931
_RS15680
SGL_RS15685: SGL_RS15685 - IS701 family transposase, at 2,968,175 to 2,969,188
_RS15685
Position (kb)
2966
2967
2968 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2965.890 kb on - strand at 2966.058 kb on - strand at 2966.140 kb on + strand at 2966.140 kb on + strand at 2966.148 kb on - strand at 2966.600 kb on + strand at 2966.632 kb on + strand at 2966.843 kb on + strand at 2966.865 kb on - strand, within SGL_RS15680 at 2966.896 kb on + strand, within SGL_RS15680 at 2966.922 kb on + strand, within SGL_RS15680 at 2966.948 kb on - strand, within SGL_RS15680 at 2966.952 kb on - strand, within SGL_RS15680 at 2966.966 kb on - strand, within SGL_RS15680 at 2966.970 kb on + strand, within SGL_RS15680 at 2967.039 kb on - strand, within SGL_RS15680 at 2967.043 kb on + strand, within SGL_RS15680 at 2967.071 kb on - strand, within SGL_RS15680 at 2967.148 kb on - strand, within SGL_RS15680 at 2967.170 kb on + strand, within SGL_RS15680 at 2967.182 kb on + strand, within SGL_RS15680 at 2967.190 kb on - strand, within SGL_RS15680 at 2967.218 kb on + strand, within SGL_RS15680 at 2967.262 kb on - strand, within SGL_RS15680 at 2967.342 kb on + strand, within SGL_RS15680 at 2967.369 kb on - strand, within SGL_RS15680 at 2967.723 kb on - strand, within SGL_RS15680
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,965,890 - +0.7 2,966,058 - +0.3 2,966,140 + +0.4 2,966,140 + -0.7 2,966,148 - -0.7 2,966,600 + -4.0 2,966,632 + -1.0 2,966,843 + -1.6 2,966,865 - SGL_RS15680 0.10 -1.8 2,966,896 + SGL_RS15680 0.13 -1.7 2,966,922 + SGL_RS15680 0.15 -1.0 2,966,948 - SGL_RS15680 0.17 -1.1 2,966,952 - SGL_RS15680 0.18 +0.3 2,966,966 - SGL_RS15680 0.19 -1.0 2,966,970 + SGL_RS15680 0.19 -1.0 2,967,039 - SGL_RS15680 0.25 -0.3 2,967,043 + SGL_RS15680 0.25 -0.9 2,967,071 - SGL_RS15680 0.28 -1.8 2,967,148 - SGL_RS15680 0.34 -1.3 2,967,170 + SGL_RS15680 0.36 -4.1 2,967,182 + SGL_RS15680 0.37 -1.9 2,967,190 - SGL_RS15680 0.38 -0.5 2,967,218 + SGL_RS15680 0.40 -0.0 2,967,262 - SGL_RS15680 0.44 +0.8 2,967,342 + SGL_RS15680 0.50 -1.0 2,967,369 - SGL_RS15680 0.53 -3.6 2,967,723 - SGL_RS15680 0.82 -0.9
Or see this region's nucleotide sequence