Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15680

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15670 and SGL_RS15675 are separated by 120 nucleotidesSGL_RS15675 and SGL_RS15680 are separated by 203 nucleotidesSGL_RS15680 and SGL_RS15685 are separated by 243 nucleotides SGL_RS15670: SGL_RS15670 - sodium/glutamate symporter, at 2,964,570 to 2,966,033 _RS15670 SGL_RS15675: SGL_RS15675 - chorismate mutase, at 2,966,154 to 2,966,537 _RS15675 SGL_RS15680: SGL_RS15680 - tetratricopeptide repeat protein, at 2,966,741 to 2,967,931 _RS15680 SGL_RS15685: SGL_RS15685 - IS701 family transposase, at 2,968,175 to 2,969,188 _RS15685 Position (kb) 2966 2967 2968Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2965.890 kb on - strandat 2966.058 kb on - strandat 2966.140 kb on + strandat 2966.140 kb on + strandat 2966.148 kb on - strandat 2966.600 kb on + strandat 2966.632 kb on + strandat 2966.843 kb on + strandat 2966.865 kb on - strand, within SGL_RS15680at 2966.896 kb on + strand, within SGL_RS15680at 2966.922 kb on + strand, within SGL_RS15680at 2966.948 kb on - strand, within SGL_RS15680at 2966.952 kb on - strand, within SGL_RS15680at 2966.966 kb on - strand, within SGL_RS15680at 2966.970 kb on + strand, within SGL_RS15680at 2967.039 kb on - strand, within SGL_RS15680at 2967.043 kb on + strand, within SGL_RS15680at 2967.071 kb on - strand, within SGL_RS15680at 2967.148 kb on - strand, within SGL_RS15680at 2967.170 kb on + strand, within SGL_RS15680at 2967.182 kb on + strand, within SGL_RS15680at 2967.190 kb on - strand, within SGL_RS15680at 2967.218 kb on + strand, within SGL_RS15680at 2967.262 kb on - strand, within SGL_RS15680at 2967.342 kb on + strand, within SGL_RS15680at 2967.369 kb on - strand, within SGL_RS15680at 2967.723 kb on - strand, within SGL_RS15680

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,965,890 - +0.7
2,966,058 - +0.3
2,966,140 + +0.4
2,966,140 + -0.7
2,966,148 - -0.7
2,966,600 + -4.0
2,966,632 + -1.0
2,966,843 + -1.6
2,966,865 - SGL_RS15680 0.10 -1.8
2,966,896 + SGL_RS15680 0.13 -1.7
2,966,922 + SGL_RS15680 0.15 -1.0
2,966,948 - SGL_RS15680 0.17 -1.1
2,966,952 - SGL_RS15680 0.18 +0.3
2,966,966 - SGL_RS15680 0.19 -1.0
2,966,970 + SGL_RS15680 0.19 -1.0
2,967,039 - SGL_RS15680 0.25 -0.3
2,967,043 + SGL_RS15680 0.25 -0.9
2,967,071 - SGL_RS15680 0.28 -1.8
2,967,148 - SGL_RS15680 0.34 -1.3
2,967,170 + SGL_RS15680 0.36 -4.1
2,967,182 + SGL_RS15680 0.37 -1.9
2,967,190 - SGL_RS15680 0.38 -0.5
2,967,218 + SGL_RS15680 0.40 -0.0
2,967,262 - SGL_RS15680 0.44 +0.8
2,967,342 + SGL_RS15680 0.50 -1.0
2,967,369 - SGL_RS15680 0.53 -3.6
2,967,723 - SGL_RS15680 0.82 -0.9

Or see this region's nucleotide sequence