Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15665

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15655 and SGL_RS15660 are separated by 58 nucleotidesSGL_RS15660 and SGL_RS15665 are separated by 169 nucleotidesSGL_RS15665 and SGL_RS15670 are separated by 57 nucleotides SGL_RS15655: SGL_RS15655 - asparaginase, at 2,961,619 to 2,962,647 _RS15655 SGL_RS15660: SGL_RS15660 - CGLD27 family protein, at 2,962,706 to 2,963,227 _RS15660 SGL_RS15665: SGL_RS15665 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 2,963,397 to 2,964,512 _RS15665 SGL_RS15670: SGL_RS15670 - sodium/glutamate symporter, at 2,964,570 to 2,966,033 _RS15670 Position (kb) 2963 2964 2965Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2962.417 kb on + strand, within SGL_RS15655at 2962.449 kb on + strand, within SGL_RS15655at 2962.495 kb on + strand, within SGL_RS15655at 2962.549 kb on - strandat 2962.707 kb on - strandat 2962.768 kb on - strand, within SGL_RS15660at 2962.921 kb on + strand, within SGL_RS15660at 2962.934 kb on - strand, within SGL_RS15660at 2963.075 kb on + strand, within SGL_RS15660at 2963.075 kb on + strand, within SGL_RS15660at 2963.082 kb on - strand, within SGL_RS15660at 2963.089 kb on + strand, within SGL_RS15660at 2963.118 kb on - strand, within SGL_RS15660at 2963.190 kb on + strandat 2963.198 kb on - strandat 2963.203 kb on - strandat 2963.257 kb on + strandat 2963.303 kb on - strandat 2963.369 kb on + strandat 2963.393 kb on + strandat 2963.401 kb on - strandat 2964.744 kb on - strand, within SGL_RS15670at 2964.775 kb on - strand, within SGL_RS15670at 2964.814 kb on + strand, within SGL_RS15670at 2964.818 kb on - strand, within SGL_RS15670at 2964.824 kb on - strand, within SGL_RS15670at 2965.129 kb on - strand, within SGL_RS15670at 2965.283 kb on - strand, within SGL_RS15670at 2965.364 kb on - strand, within SGL_RS15670

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,962,417 + SGL_RS15655 0.78 -3.8
2,962,449 + SGL_RS15655 0.81 -4.3
2,962,495 + SGL_RS15655 0.85 -3.6
2,962,549 - +3.7
2,962,707 - -0.1
2,962,768 - SGL_RS15660 0.12 +0.9
2,962,921 + SGL_RS15660 0.41 -0.6
2,962,934 - SGL_RS15660 0.44 +0.6
2,963,075 + SGL_RS15660 0.71 -1.6
2,963,075 + SGL_RS15660 0.71 -0.5
2,963,082 - SGL_RS15660 0.72 -1.0
2,963,089 + SGL_RS15660 0.73 +1.3
2,963,118 - SGL_RS15660 0.79 -0.7
2,963,190 + -0.1
2,963,198 - +0.6
2,963,203 - -1.8
2,963,257 + -1.0
2,963,303 - +2.9
2,963,369 + -1.3
2,963,393 + +0.1
2,963,401 - -1.6
2,964,744 - SGL_RS15670 0.12 +0.9
2,964,775 - SGL_RS15670 0.14 +0.3
2,964,814 + SGL_RS15670 0.17 -0.8
2,964,818 - SGL_RS15670 0.17 -0.1
2,964,824 - SGL_RS15670 0.17 +0.3
2,965,129 - SGL_RS15670 0.38 -1.7
2,965,283 - SGL_RS15670 0.49 +0.4
2,965,364 - SGL_RS15670 0.54 +1.9

Or see this region's nucleotide sequence