Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15495 and SGL_RS15500 are separated by 172 nucleotides SGL_RS15500 and SGL_RS15505 overlap by 4 nucleotides SGL_RS15505 and SGL_RS15510 overlap by 4 nucleotides
SGL_RS15495: SGL_RS15495 - Fe(3+) ABC transporter substrate-binding protein, at 2,924,779 to 2,925,819
_RS15495
SGL_RS15500: SGL_RS15500 - hypothetical protein, at 2,925,992 to 2,926,786
_RS15500
SGL_RS15505: SGL_RS15505 - pentapeptide repeat-containing protein, at 2,926,783 to 2,927,283
_RS15505
SGL_RS15510: SGL_RS15510 - ATP-binding protein, at 2,927,280 to 2,929,700
_RS15510
Position (kb)
2925
2926
2927 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2925.003 kb on + strand, within SGL_RS15495 at 2925.040 kb on - strand, within SGL_RS15495 at 2925.056 kb on - strand, within SGL_RS15495 at 2925.203 kb on - strand, within SGL_RS15495 at 2925.207 kb on + strand, within SGL_RS15495 at 2925.234 kb on - strand, within SGL_RS15495 at 2925.272 kb on + strand, within SGL_RS15495 at 2925.352 kb on + strand, within SGL_RS15495 at 2925.359 kb on - strand, within SGL_RS15495 at 2925.580 kb on - strand, within SGL_RS15495 at 2925.580 kb on - strand, within SGL_RS15495 at 2925.659 kb on - strand, within SGL_RS15495 at 2925.689 kb on + strand, within SGL_RS15495 at 2925.762 kb on - strand at 2925.909 kb on - strand at 2926.053 kb on + strand at 2926.084 kb on - strand, within SGL_RS15500 at 2926.248 kb on - strand, within SGL_RS15500 at 2926.248 kb on - strand, within SGL_RS15500 at 2926.248 kb on - strand, within SGL_RS15500 at 2926.343 kb on + strand, within SGL_RS15500 at 2926.351 kb on - strand, within SGL_RS15500 at 2926.429 kb on - strand, within SGL_RS15500 at 2926.489 kb on - strand, within SGL_RS15500 at 2926.510 kb on - strand, within SGL_RS15500 at 2926.544 kb on - strand, within SGL_RS15500 at 2926.544 kb on - strand, within SGL_RS15500 at 2926.571 kb on + strand, within SGL_RS15500 at 2926.600 kb on - strand, within SGL_RS15500 at 2926.623 kb on + strand, within SGL_RS15500 at 2926.916 kb on - strand, within SGL_RS15505 at 2927.025 kb on - strand, within SGL_RS15505 at 2927.102 kb on + strand, within SGL_RS15505 at 2927.115 kb on - strand, within SGL_RS15505 at 2927.182 kb on + strand, within SGL_RS15505 at 2927.182 kb on + strand, within SGL_RS15505 at 2927.201 kb on - strand, within SGL_RS15505 at 2927.399 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,925,003 + SGL_RS15495 0.22 -3.1 2,925,040 - SGL_RS15495 0.25 -3.2 2,925,056 - SGL_RS15495 0.27 -5.1 2,925,203 - SGL_RS15495 0.41 -4.5 2,925,207 + SGL_RS15495 0.41 -2.9 2,925,234 - SGL_RS15495 0.44 -6.1 2,925,272 + SGL_RS15495 0.47 -3.5 2,925,352 + SGL_RS15495 0.55 -3.6 2,925,359 - SGL_RS15495 0.56 -3.6 2,925,580 - SGL_RS15495 0.77 -4.5 2,925,580 - SGL_RS15495 0.77 -1.7 2,925,659 - SGL_RS15495 0.85 -4.5 2,925,689 + SGL_RS15495 0.87 -0.9 2,925,762 - -3.6 2,925,909 - -4.1 2,926,053 + -3.2 2,926,084 - SGL_RS15500 0.12 -3.8 2,926,248 - SGL_RS15500 0.32 -4.0 2,926,248 - SGL_RS15500 0.32 -5.4 2,926,248 - SGL_RS15500 0.32 -4.9 2,926,343 + SGL_RS15500 0.44 -4.5 2,926,351 - SGL_RS15500 0.45 -4.3 2,926,429 - SGL_RS15500 0.55 -4.6 2,926,489 - SGL_RS15500 0.63 -3.7 2,926,510 - SGL_RS15500 0.65 -4.1 2,926,544 - SGL_RS15500 0.69 -3.6 2,926,544 - SGL_RS15500 0.69 -4.7 2,926,571 + SGL_RS15500 0.73 -4.5 2,926,600 - SGL_RS15500 0.76 -4.6 2,926,623 + SGL_RS15500 0.79 -4.9 2,926,916 - SGL_RS15505 0.27 -4.8 2,927,025 - SGL_RS15505 0.48 -3.9 2,927,102 + SGL_RS15505 0.64 -4.2 2,927,115 - SGL_RS15505 0.66 -4.6 2,927,182 + SGL_RS15505 0.80 -3.4 2,927,182 + SGL_RS15505 0.80 -4.8 2,927,201 - SGL_RS15505 0.83 -4.7 2,927,399 + +0.8
Or see this region's nucleotide sequence