Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15470 and SGL_RS15475 are separated by 45 nucleotides SGL_RS15475 and SGL_RS15480 are separated by 137 nucleotides SGL_RS15480 and SGL_RS15485 overlap by 4 nucleotides SGL_RS15485 and SGL_RS15490 are separated by 3 nucleotides
SGL_RS15470: SGL_RS15470 - IS5 family transposase, at 2,921,660 to 2,922,439
_RS15470
SGL_RS15475: SGL_RS15475 - hypothetical protein, at 2,922,485 to 2,922,769
_RS15475
SGL_RS15480: SGL_RS15480 - biopolymer transporter ExbD, at 2,922,907 to 2,923,359
_RS15480
SGL_RS15485: SGL_RS15485 - biopolymer transporter ExbD, at 2,923,356 to 2,923,799
_RS15485
SGL_RS15490: SGL_RS15490 - MotA/TolQ/ExbB proton channel family protein, at 2,923,803 to 2,924,567
_RS15490
Position (kb)
2922
2923
2924 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2923.012 kb on - strand, within SGL_RS15480 at 2923.129 kb on - strand, within SGL_RS15480 at 2923.189 kb on - strand, within SGL_RS15480 at 2923.218 kb on - strand, within SGL_RS15480 at 2923.295 kb on - strand, within SGL_RS15480 at 2923.461 kb on + strand, within SGL_RS15485 at 2923.466 kb on + strand, within SGL_RS15485 at 2923.656 kb on + strand, within SGL_RS15485 at 2923.801 kb on + strand at 2923.801 kb on + strand at 2923.824 kb on - strand at 2923.850 kb on + strand at 2923.858 kb on - strand at 2923.936 kb on - strand, within SGL_RS15490 at 2924.237 kb on + strand, within SGL_RS15490 at 2924.237 kb on + strand, within SGL_RS15490 at 2924.332 kb on + strand, within SGL_RS15490
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,923,012 - SGL_RS15480 0.23 -4.1 2,923,129 - SGL_RS15480 0.49 -5.1 2,923,189 - SGL_RS15480 0.62 -5.2 2,923,218 - SGL_RS15480 0.69 -3.7 2,923,295 - SGL_RS15480 0.86 -0.5 2,923,461 + SGL_RS15485 0.24 -2.2 2,923,466 + SGL_RS15485 0.25 -5.6 2,923,656 + SGL_RS15485 0.68 -3.9 2,923,801 + +0.3 2,923,801 + -0.7 2,923,824 - -5.0 2,923,850 + -1.6 2,923,858 - -2.1 2,923,936 - SGL_RS15490 0.17 -2.5 2,924,237 + SGL_RS15490 0.57 -4.1 2,924,237 + SGL_RS15490 0.57 -1.1 2,924,332 + SGL_RS15490 0.69 +0.2
Or see this region's nucleotide sequence