Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15195 and SGL_RS15200 are separated by 210 nucleotides SGL_RS15200 and SGL_RS15205 are separated by 28 nucleotides SGL_RS15205 and SGL_RS15210 are separated by 166 nucleotides SGL_RS15210 and SGL_RS15215 are separated by 163 nucleotides
SGL_RS15195: SGL_RS15195 - hypothetical protein, at 2,860,071 to 2,860,289
_RS15195
SGL_RS15200: SGL_RS15200 - hypothetical protein, at 2,860,500 to 2,861,072
_RS15200
SGL_RS15205: SGL_RS15205 - succinate dehydrogenase iron-sulfur subunit, at 2,861,101 to 2,861,838
_RS15205
SGL_RS15210: SGL_RS15210 - AbrB family transcriptional regulator, at 2,862,005 to 2,862,394
_RS15210
SGL_RS15215: SGL_RS15215 - RrF2 family transcriptional regulator, at 2,862,558 to 2,863,031
_RS15215
Position (kb)
2861
2862 Strain fitness (log2 ratio)
-1
0
1
2 at 2860.213 kb on - strand, within SGL_RS15195 at 2860.274 kb on - strand at 2860.328 kb on - strand at 2860.652 kb on - strand, within SGL_RS15200 at 2860.673 kb on - strand, within SGL_RS15200 at 2860.966 kb on + strand, within SGL_RS15200 at 2861.148 kb on - strand at 2861.152 kb on + strand at 2861.240 kb on + strand, within SGL_RS15205 at 2861.409 kb on + strand, within SGL_RS15205 at 2861.409 kb on + strand, within SGL_RS15205 at 2861.409 kb on + strand, within SGL_RS15205 at 2861.554 kb on - strand, within SGL_RS15205 at 2861.616 kb on + strand, within SGL_RS15205 at 2861.626 kb on + strand, within SGL_RS15205 at 2861.626 kb on + strand, within SGL_RS15205 at 2861.730 kb on + strand, within SGL_RS15205 at 2862.572 kb on + strand at 2862.706 kb on - strand, within SGL_RS15215
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,860,213 - SGL_RS15195 0.65 +0.6 2,860,274 - -0.0 2,860,328 - +1.7 2,860,652 - SGL_RS15200 0.27 +0.4 2,860,673 - SGL_RS15200 0.30 +0.2 2,860,966 + SGL_RS15200 0.81 -0.5 2,861,148 - +1.3 2,861,152 + -0.0 2,861,240 + SGL_RS15205 0.19 +0.7 2,861,409 + SGL_RS15205 0.42 -0.0 2,861,409 + SGL_RS15205 0.42 -1.0 2,861,409 + SGL_RS15205 0.42 -0.1 2,861,554 - SGL_RS15205 0.61 -0.1 2,861,616 + SGL_RS15205 0.70 -0.0 2,861,626 + SGL_RS15205 0.71 +0.4 2,861,626 + SGL_RS15205 0.71 +0.2 2,861,730 + SGL_RS15205 0.85 -1.4 2,862,572 + +0.6 2,862,706 - SGL_RS15215 0.31 +2.3
Or see this region's nucleotide sequence