Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14875 and SGL_RS14880 are separated by 57 nucleotides SGL_RS14880 and SGL_RS14885 are separated by 50 nucleotides SGL_RS14885 and SGL_RS14890 are separated by 37 nucleotides SGL_RS14890 and SGL_RS14895 are separated by 541 nucleotides
SGL_RS14875: SGL_RS14875 - NUDIX hydrolase, at 2,794,431 to 2,794,880
_RS14875
SGL_RS14880: SGL_RS14880 - aspartate 1-decarboxylase, at 2,794,938 to 2,795,375
_RS14880
SGL_RS14885: SGL_RS14885 - malate dehydrogenase, at 2,795,426 to 2,796,400
_RS14885
SGL_RS14890: SGL_RS14890 - NAD(P)H-quinone oxidoreductase subunit O, at 2,796,438 to 2,796,656
_RS14890
SGL_RS14895: SGL_RS14895 - DUF2811 domain-containing protein, at 2,797,198 to 2,797,425
_RS14895
Position (kb)
2795
2796
2797 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 2794.468 kb on - strand at 2794.532 kb on + strand, within SGL_RS14875 at 2794.581 kb on - strand, within SGL_RS14875 at 2794.640 kb on + strand, within SGL_RS14875 at 2794.789 kb on + strand, within SGL_RS14875 at 2795.060 kb on - strand, within SGL_RS14880 at 2795.246 kb on + strand, within SGL_RS14880 at 2795.468 kb on - strand at 2795.668 kb on - strand, within SGL_RS14885 at 2795.831 kb on + strand, within SGL_RS14885 at 2795.854 kb on + strand, within SGL_RS14885 at 2795.862 kb on - strand, within SGL_RS14885 at 2795.862 kb on - strand, within SGL_RS14885 at 2795.864 kb on + strand, within SGL_RS14885 at 2795.892 kb on - strand, within SGL_RS14885 at 2795.914 kb on + strand, within SGL_RS14885 at 2796.052 kb on - strand, within SGL_RS14885 at 2796.063 kb on + strand, within SGL_RS14885 at 2796.181 kb on - strand, within SGL_RS14885 at 2796.313 kb on + strand at 2796.349 kb on + strand at 2796.414 kb on - strand at 2796.466 kb on - strand, within SGL_RS14890 at 2796.478 kb on - strand, within SGL_RS14890 at 2796.631 kb on - strand, within SGL_RS14890 at 2796.864 kb on - strand at 2797.160 kb on + strand at 2797.281 kb on - strand, within SGL_RS14895 at 2797.309 kb on + strand, within SGL_RS14895 at 2797.323 kb on - strand, within SGL_RS14895
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,794,468 - +0.9 2,794,532 + SGL_RS14875 0.22 +0.7 2,794,581 - SGL_RS14875 0.33 +0.4 2,794,640 + SGL_RS14875 0.46 -2.5 2,794,789 + SGL_RS14875 0.80 -0.1 2,795,060 - SGL_RS14880 0.28 +0.2 2,795,246 + SGL_RS14880 0.70 +0.7 2,795,468 - -0.5 2,795,668 - SGL_RS14885 0.25 -0.3 2,795,831 + SGL_RS14885 0.42 -1.8 2,795,854 + SGL_RS14885 0.44 -0.9 2,795,862 - SGL_RS14885 0.45 -1.3 2,795,862 - SGL_RS14885 0.45 +0.5 2,795,864 + SGL_RS14885 0.45 -0.6 2,795,892 - SGL_RS14885 0.48 -1.3 2,795,914 + SGL_RS14885 0.50 -1.6 2,796,052 - SGL_RS14885 0.64 -1.8 2,796,063 + SGL_RS14885 0.65 +0.2 2,796,181 - SGL_RS14885 0.77 -1.0 2,796,313 + +0.6 2,796,349 + +0.1 2,796,414 - -1.2 2,796,466 - SGL_RS14890 0.13 +1.4 2,796,478 - SGL_RS14890 0.18 +1.2 2,796,631 - SGL_RS14890 0.88 +2.2 2,796,864 - +4.7 2,797,160 + +6.7 2,797,281 - SGL_RS14895 0.36 +7.0 2,797,309 + SGL_RS14895 0.49 +6.3 2,797,323 - SGL_RS14895 0.55 +6.9
Or see this region's nucleotide sequence