Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14885

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14875 and SGL_RS14880 are separated by 57 nucleotidesSGL_RS14880 and SGL_RS14885 are separated by 50 nucleotidesSGL_RS14885 and SGL_RS14890 are separated by 37 nucleotidesSGL_RS14890 and SGL_RS14895 are separated by 541 nucleotides SGL_RS14875: SGL_RS14875 - NUDIX hydrolase, at 2,794,431 to 2,794,880 _RS14875 SGL_RS14880: SGL_RS14880 - aspartate 1-decarboxylase, at 2,794,938 to 2,795,375 _RS14880 SGL_RS14885: SGL_RS14885 - malate dehydrogenase, at 2,795,426 to 2,796,400 _RS14885 SGL_RS14890: SGL_RS14890 - NAD(P)H-quinone oxidoreductase subunit O, at 2,796,438 to 2,796,656 _RS14890 SGL_RS14895: SGL_RS14895 - DUF2811 domain-containing protein, at 2,797,198 to 2,797,425 _RS14895 Position (kb) 2795 2796 2797Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 2794.468 kb on - strandat 2794.532 kb on + strand, within SGL_RS14875at 2794.581 kb on - strand, within SGL_RS14875at 2794.640 kb on + strand, within SGL_RS14875at 2794.789 kb on + strand, within SGL_RS14875at 2795.060 kb on - strand, within SGL_RS14880at 2795.246 kb on + strand, within SGL_RS14880at 2795.468 kb on - strandat 2795.668 kb on - strand, within SGL_RS14885at 2795.831 kb on + strand, within SGL_RS14885at 2795.854 kb on + strand, within SGL_RS14885at 2795.862 kb on - strand, within SGL_RS14885at 2795.862 kb on - strand, within SGL_RS14885at 2795.864 kb on + strand, within SGL_RS14885at 2795.892 kb on - strand, within SGL_RS14885at 2795.914 kb on + strand, within SGL_RS14885at 2796.052 kb on - strand, within SGL_RS14885at 2796.063 kb on + strand, within SGL_RS14885at 2796.181 kb on - strand, within SGL_RS14885at 2796.313 kb on + strandat 2796.349 kb on + strandat 2796.414 kb on - strandat 2796.466 kb on - strand, within SGL_RS14890at 2796.478 kb on - strand, within SGL_RS14890at 2796.631 kb on - strand, within SGL_RS14890at 2796.864 kb on - strandat 2797.160 kb on + strandat 2797.281 kb on - strand, within SGL_RS14895at 2797.309 kb on + strand, within SGL_RS14895at 2797.323 kb on - strand, within SGL_RS14895

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,794,468 - +0.9
2,794,532 + SGL_RS14875 0.22 +0.7
2,794,581 - SGL_RS14875 0.33 +0.4
2,794,640 + SGL_RS14875 0.46 -2.5
2,794,789 + SGL_RS14875 0.80 -0.1
2,795,060 - SGL_RS14880 0.28 +0.2
2,795,246 + SGL_RS14880 0.70 +0.7
2,795,468 - -0.5
2,795,668 - SGL_RS14885 0.25 -0.3
2,795,831 + SGL_RS14885 0.42 -1.8
2,795,854 + SGL_RS14885 0.44 -0.9
2,795,862 - SGL_RS14885 0.45 -1.3
2,795,862 - SGL_RS14885 0.45 +0.5
2,795,864 + SGL_RS14885 0.45 -0.6
2,795,892 - SGL_RS14885 0.48 -1.3
2,795,914 + SGL_RS14885 0.50 -1.6
2,796,052 - SGL_RS14885 0.64 -1.8
2,796,063 + SGL_RS14885 0.65 +0.2
2,796,181 - SGL_RS14885 0.77 -1.0
2,796,313 + +0.6
2,796,349 + +0.1
2,796,414 - -1.2
2,796,466 - SGL_RS14890 0.13 +1.4
2,796,478 - SGL_RS14890 0.18 +1.2
2,796,631 - SGL_RS14890 0.88 +2.2
2,796,864 - +4.7
2,797,160 + +6.7
2,797,281 - SGL_RS14895 0.36 +7.0
2,797,309 + SGL_RS14895 0.49 +6.3
2,797,323 - SGL_RS14895 0.55 +6.9

Or see this region's nucleotide sequence