Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14735 and SGL_RS14740 are separated by 145 nucleotides SGL_RS14740 and SGL_RS14745 are separated by 54 nucleotides SGL_RS14745 and SGL_RS14750 are separated by 56 nucleotides
SGL_RS14735: SGL_RS14735 - NACHT domain-containing NTPase, at 2,755,703 to 2,759,662
_RS14735
SGL_RS14740: SGL_RS14740 - Uma2 family endonuclease, at 2,759,808 to 2,760,380
_RS14740
SGL_RS14745: SGL_RS14745 - hypothetical protein, at 2,760,435 to 2,760,632
_RS14745
SGL_RS14750: SGL_RS14750 - TldD/PmbA family protein, at 2,760,689 to 2,762,029
_RS14750
Position (kb)
2759
2760
2761 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7
8
9 at 2759.336 kb on - strand at 2759.542 kb on - strand at 2759.594 kb on + strand at 2759.633 kb on - strand at 2760.002 kb on + strand, within SGL_RS14740 at 2760.007 kb on + strand, within SGL_RS14740 at 2760.547 kb on + strand, within SGL_RS14745 at 2760.675 kb on - strand at 2760.704 kb on + strand at 2760.729 kb on + strand at 2760.850 kb on - strand, within SGL_RS14750 at 2760.860 kb on + strand, within SGL_RS14750 at 2760.866 kb on + strand, within SGL_RS14750 at 2761.025 kb on + strand, within SGL_RS14750 at 2761.164 kb on + strand, within SGL_RS14750 at 2761.178 kb on + strand, within SGL_RS14750 at 2761.183 kb on + strand, within SGL_RS14750 at 2761.205 kb on - strand, within SGL_RS14750 at 2761.210 kb on - strand, within SGL_RS14750
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,759,336 - +0.8 2,759,542 - -0.1 2,759,594 + +0.6 2,759,633 - +0.8 2,760,002 + SGL_RS14740 0.34 -0.2 2,760,007 + SGL_RS14740 0.35 -0.5 2,760,547 + SGL_RS14745 0.57 -1.0 2,760,675 - -1.2 2,760,704 + +1.6 2,760,729 + +8.6 2,760,850 - SGL_RS14750 0.12 +8.4 2,760,860 + SGL_RS14750 0.13 +8.3 2,760,866 + SGL_RS14750 0.13 +9.0 2,761,025 + SGL_RS14750 0.25 +8.6 2,761,164 + SGL_RS14750 0.35 +8.0 2,761,178 + SGL_RS14750 0.36 +8.8 2,761,183 + SGL_RS14750 0.37 +8.3 2,761,205 - SGL_RS14750 0.38 +8.4 2,761,210 - SGL_RS14750 0.39 +8.6
Or see this region's nucleotide sequence