Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14740

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14735 and SGL_RS14740 are separated by 145 nucleotidesSGL_RS14740 and SGL_RS14745 are separated by 54 nucleotidesSGL_RS14745 and SGL_RS14750 are separated by 56 nucleotides SGL_RS14735: SGL_RS14735 - NACHT domain-containing NTPase, at 2,755,703 to 2,759,662 _RS14735 SGL_RS14740: SGL_RS14740 - Uma2 family endonuclease, at 2,759,808 to 2,760,380 _RS14740 SGL_RS14745: SGL_RS14745 - hypothetical protein, at 2,760,435 to 2,760,632 _RS14745 SGL_RS14750: SGL_RS14750 - TldD/PmbA family protein, at 2,760,689 to 2,762,029 _RS14750 Position (kb) 2759 2760 2761Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9at 2759.336 kb on - strandat 2759.542 kb on - strandat 2759.594 kb on + strandat 2759.633 kb on - strandat 2760.002 kb on + strand, within SGL_RS14740at 2760.007 kb on + strand, within SGL_RS14740at 2760.547 kb on + strand, within SGL_RS14745at 2760.675 kb on - strandat 2760.704 kb on + strandat 2760.729 kb on + strandat 2760.850 kb on - strand, within SGL_RS14750at 2760.860 kb on + strand, within SGL_RS14750at 2760.866 kb on + strand, within SGL_RS14750at 2761.025 kb on + strand, within SGL_RS14750at 2761.164 kb on + strand, within SGL_RS14750at 2761.178 kb on + strand, within SGL_RS14750at 2761.183 kb on + strand, within SGL_RS14750at 2761.205 kb on - strand, within SGL_RS14750at 2761.210 kb on - strand, within SGL_RS14750

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,759,336 - +0.8
2,759,542 - -0.1
2,759,594 + +0.6
2,759,633 - +0.8
2,760,002 + SGL_RS14740 0.34 -0.2
2,760,007 + SGL_RS14740 0.35 -0.5
2,760,547 + SGL_RS14745 0.57 -1.0
2,760,675 - -1.2
2,760,704 + +1.6
2,760,729 + +8.6
2,760,850 - SGL_RS14750 0.12 +8.4
2,760,860 + SGL_RS14750 0.13 +8.3
2,760,866 + SGL_RS14750 0.13 +9.0
2,761,025 + SGL_RS14750 0.25 +8.6
2,761,164 + SGL_RS14750 0.35 +8.0
2,761,178 + SGL_RS14750 0.36 +8.8
2,761,183 + SGL_RS14750 0.37 +8.3
2,761,205 - SGL_RS14750 0.38 +8.4
2,761,210 - SGL_RS14750 0.39 +8.6

Or see this region's nucleotide sequence