Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14200

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14195 and SGL_RS14200 are separated by 81 nucleotidesSGL_RS14200 and SGL_RS14205 are separated by 321 nucleotides SGL_RS14195: SGL_RS14195 - phosphate ABC transporter permease subunit PstC, at 2,639,627 to 2,640,580 _RS14195 SGL_RS14200: SGL_RS14200 - phosphate ABC transporter substrate-binding protein PstS, at 2,640,662 to 2,641,813 _RS14200 SGL_RS14205: SGL_RS14205 - PstS family phosphate ABC transporter substrate-binding protein, at 2,642,135 to 2,643,145 _RS14205 Position (kb) 2640 2641 2642Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10 11 12at 2639.698 kb on + strandat 2639.714 kb on + strandat 2639.883 kb on - strand, within SGL_RS14195at 2640.084 kb on + strand, within SGL_RS14195at 2640.188 kb on + strand, within SGL_RS14195at 2640.434 kb on + strand, within SGL_RS14195at 2640.474 kb on - strand, within SGL_RS14195at 2640.938 kb on + strand, within SGL_RS14200at 2641.034 kb on + strand, within SGL_RS14200at 2641.069 kb on + strand, within SGL_RS14200at 2641.095 kb on - strand, within SGL_RS14200at 2641.355 kb on + strand, within SGL_RS14200at 2641.355 kb on + strand, within SGL_RS14200at 2641.362 kb on - strand, within SGL_RS14200at 2641.362 kb on - strand, within SGL_RS14200at 2641.379 kb on + strand, within SGL_RS14200at 2641.385 kb on + strand, within SGL_RS14200at 2641.387 kb on - strand, within SGL_RS14200at 2641.398 kb on - strand, within SGL_RS14200at 2641.400 kb on + strand, within SGL_RS14200at 2641.457 kb on + strand, within SGL_RS14200at 2641.533 kb on + strand, within SGL_RS14200at 2641.584 kb on - strand, within SGL_RS14200at 2641.633 kb on - strand, within SGL_RS14200at 2641.688 kb on + strand, within SGL_RS14200at 2641.698 kb on + strandat 2641.698 kb on + strandat 2641.706 kb on - strandat 2641.761 kb on - strandat 2641.890 kb on - strandat 2642.198 kb on + strandat 2642.246 kb on + strand, within SGL_RS14205at 2642.246 kb on + strand, within SGL_RS14205at 2642.246 kb on + strand, within SGL_RS14205at 2642.340 kb on + strand, within SGL_RS14205at 2642.442 kb on + strand, within SGL_RS14205at 2642.528 kb on - strand, within SGL_RS14205at 2642.652 kb on + strand, within SGL_RS14205at 2642.655 kb on + strand, within SGL_RS14205at 2642.800 kb on + strand, within SGL_RS14205at 2642.808 kb on - strand, within SGL_RS14205

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,639,698 + +7.7
2,639,714 + +8.4
2,639,883 - SGL_RS14195 0.27 +6.8
2,640,084 + SGL_RS14195 0.48 +8.1
2,640,188 + SGL_RS14195 0.59 +7.6
2,640,434 + SGL_RS14195 0.85 +6.6
2,640,474 - SGL_RS14195 0.89 +7.4
2,640,938 + SGL_RS14200 0.24 +9.2
2,641,034 + SGL_RS14200 0.32 +8.7
2,641,069 + SGL_RS14200 0.35 +10.6
2,641,095 - SGL_RS14200 0.38 +8.4
2,641,355 + SGL_RS14200 0.60 +10.3
2,641,355 + SGL_RS14200 0.60 +11.5
2,641,362 - SGL_RS14200 0.61 +9.0
2,641,362 - SGL_RS14200 0.61 +8.6
2,641,379 + SGL_RS14200 0.62 +12.6
2,641,385 + SGL_RS14200 0.63 +10.0
2,641,387 - SGL_RS14200 0.63 +10.0
2,641,398 - SGL_RS14200 0.64 +8.2
2,641,400 + SGL_RS14200 0.64 +9.7
2,641,457 + SGL_RS14200 0.69 +9.8
2,641,533 + SGL_RS14200 0.76 +9.7
2,641,584 - SGL_RS14200 0.80 +7.5
2,641,633 - SGL_RS14200 0.84 +11.8
2,641,688 + SGL_RS14200 0.89 +10.2
2,641,698 + +10.9
2,641,698 + +9.4
2,641,706 - +8.7
2,641,761 - +7.3
2,641,890 - +6.0
2,642,198 + +0.2
2,642,246 + SGL_RS14205 0.11 +1.3
2,642,246 + SGL_RS14205 0.11 +0.3
2,642,246 + SGL_RS14205 0.11 +0.2
2,642,340 + SGL_RS14205 0.20 +0.6
2,642,442 + SGL_RS14205 0.30 +0.1
2,642,528 - SGL_RS14205 0.39 -0.3
2,642,652 + SGL_RS14205 0.51 -2.0
2,642,655 + SGL_RS14205 0.51 -0.6
2,642,800 + SGL_RS14205 0.66 -1.4
2,642,808 - SGL_RS14205 0.67 -0.5

Or see this region's nucleotide sequence