Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14170 and SGL_RS14175 are separated by 189 nucleotides SGL_RS14175 and SGL_RS14180 are separated by 103 nucleotides SGL_RS14180 and SGL_RS14185 are separated by 114 nucleotides SGL_RS14185 and SGL_RS14190 are separated by 25 nucleotides
SGL_RS14170: SGL_RS14170 - cytochrome c biogenesis protein CcdA, at 2,635,219 to 2,636,046
_RS14170
SGL_RS14175: SGL_RS14175 - thioredoxin family protein, at 2,636,236 to 2,636,724
_RS14175
SGL_RS14180: SGL_RS14180 - phosphate ABC transporter ATP-binding protein PstB, at 2,636,828 to 2,637,628
_RS14180
SGL_RS14185: SGL_RS14185 - phosphate ABC transporter ATP-binding protein PstB, at 2,637,743 to 2,638,552
_RS14185
SGL_RS14190: SGL_RS14190 - phosphate ABC transporter permease PstA, at 2,638,578 to 2,639,441
_RS14190
Position (kb)
2636
2637
2638 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8
9 at 2635.942 kb on + strand, within SGL_RS14170 at 2635.942 kb on + strand, within SGL_RS14170 at 2635.957 kb on - strand, within SGL_RS14170 at 2635.961 kb on + strand, within SGL_RS14170 at 2635.961 kb on + strand, within SGL_RS14170 at 2635.969 kb on - strand at 2636.087 kb on - strand at 2636.502 kb on + strand, within SGL_RS14175 at 2636.502 kb on + strand, within SGL_RS14175 at 2636.556 kb on + strand, within SGL_RS14175 at 2636.576 kb on + strand, within SGL_RS14175 at 2636.769 kb on - strand at 2636.855 kb on - strand at 2636.913 kb on - strand, within SGL_RS14180 at 2636.921 kb on - strand, within SGL_RS14180 at 2636.923 kb on - strand, within SGL_RS14180 at 2637.146 kb on - strand, within SGL_RS14180 at 2637.169 kb on + strand, within SGL_RS14180 at 2637.258 kb on - strand, within SGL_RS14180 at 2637.343 kb on + strand, within SGL_RS14180 at 2637.368 kb on - strand, within SGL_RS14180 at 2637.413 kb on - strand, within SGL_RS14180 at 2637.632 kb on - strand at 2637.706 kb on - strand at 2637.976 kb on + strand, within SGL_RS14185 at 2637.989 kb on + strand, within SGL_RS14185 at 2638.077 kb on - strand, within SGL_RS14185 at 2638.204 kb on - strand, within SGL_RS14185 at 2638.306 kb on - strand, within SGL_RS14185 at 2638.316 kb on + strand, within SGL_RS14185
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,635,942 + SGL_RS14170 0.87 +0.0 2,635,942 + SGL_RS14170 0.87 -1.4 2,635,957 - SGL_RS14170 0.89 -1.0 2,635,961 + SGL_RS14170 0.90 -0.0 2,635,961 + SGL_RS14170 0.90 -1.8 2,635,969 - -0.3 2,636,087 - +0.5 2,636,502 + SGL_RS14175 0.54 +0.6 2,636,502 + SGL_RS14175 0.54 +0.4 2,636,556 + SGL_RS14175 0.65 -0.8 2,636,576 + SGL_RS14175 0.70 -0.1 2,636,769 - +0.4 2,636,855 - +8.6 2,636,913 - SGL_RS14180 0.11 +7.9 2,636,921 - SGL_RS14180 0.12 +8.1 2,636,923 - SGL_RS14180 0.12 +7.9 2,637,146 - SGL_RS14180 0.40 +7.6 2,637,169 + SGL_RS14180 0.43 +8.8 2,637,258 - SGL_RS14180 0.54 +7.9 2,637,343 + SGL_RS14180 0.64 +8.1 2,637,368 - SGL_RS14180 0.67 +8.0 2,637,413 - SGL_RS14180 0.73 +7.7 2,637,632 - +8.8 2,637,706 - +4.6 2,637,976 + SGL_RS14185 0.29 +7.6 2,637,989 + SGL_RS14185 0.30 +7.3 2,638,077 - SGL_RS14185 0.41 +7.5 2,638,204 - SGL_RS14185 0.57 +6.4 2,638,306 - SGL_RS14185 0.70 +7.6 2,638,316 + SGL_RS14185 0.71 +6.7
Or see this region's nucleotide sequence