Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14180

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14170 and SGL_RS14175 are separated by 189 nucleotidesSGL_RS14175 and SGL_RS14180 are separated by 103 nucleotidesSGL_RS14180 and SGL_RS14185 are separated by 114 nucleotidesSGL_RS14185 and SGL_RS14190 are separated by 25 nucleotides SGL_RS14170: SGL_RS14170 - cytochrome c biogenesis protein CcdA, at 2,635,219 to 2,636,046 _RS14170 SGL_RS14175: SGL_RS14175 - thioredoxin family protein, at 2,636,236 to 2,636,724 _RS14175 SGL_RS14180: SGL_RS14180 - phosphate ABC transporter ATP-binding protein PstB, at 2,636,828 to 2,637,628 _RS14180 SGL_RS14185: SGL_RS14185 - phosphate ABC transporter ATP-binding protein PstB, at 2,637,743 to 2,638,552 _RS14185 SGL_RS14190: SGL_RS14190 - phosphate ABC transporter permease PstA, at 2,638,578 to 2,639,441 _RS14190 Position (kb) 2636 2637 2638Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9at 2635.942 kb on + strand, within SGL_RS14170at 2635.942 kb on + strand, within SGL_RS14170at 2635.957 kb on - strand, within SGL_RS14170at 2635.961 kb on + strand, within SGL_RS14170at 2635.961 kb on + strand, within SGL_RS14170at 2635.969 kb on - strandat 2636.087 kb on - strandat 2636.502 kb on + strand, within SGL_RS14175at 2636.502 kb on + strand, within SGL_RS14175at 2636.556 kb on + strand, within SGL_RS14175at 2636.576 kb on + strand, within SGL_RS14175at 2636.769 kb on - strandat 2636.855 kb on - strandat 2636.913 kb on - strand, within SGL_RS14180at 2636.921 kb on - strand, within SGL_RS14180at 2636.923 kb on - strand, within SGL_RS14180at 2637.146 kb on - strand, within SGL_RS14180at 2637.169 kb on + strand, within SGL_RS14180at 2637.258 kb on - strand, within SGL_RS14180at 2637.343 kb on + strand, within SGL_RS14180at 2637.368 kb on - strand, within SGL_RS14180at 2637.413 kb on - strand, within SGL_RS14180at 2637.632 kb on - strandat 2637.706 kb on - strandat 2637.976 kb on + strand, within SGL_RS14185at 2637.989 kb on + strand, within SGL_RS14185at 2638.077 kb on - strand, within SGL_RS14185at 2638.204 kb on - strand, within SGL_RS14185at 2638.306 kb on - strand, within SGL_RS14185at 2638.316 kb on + strand, within SGL_RS14185

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,635,942 + SGL_RS14170 0.87 +0.0
2,635,942 + SGL_RS14170 0.87 -1.4
2,635,957 - SGL_RS14170 0.89 -1.0
2,635,961 + SGL_RS14170 0.90 -0.0
2,635,961 + SGL_RS14170 0.90 -1.8
2,635,969 - -0.3
2,636,087 - +0.5
2,636,502 + SGL_RS14175 0.54 +0.6
2,636,502 + SGL_RS14175 0.54 +0.4
2,636,556 + SGL_RS14175 0.65 -0.8
2,636,576 + SGL_RS14175 0.70 -0.1
2,636,769 - +0.4
2,636,855 - +8.6
2,636,913 - SGL_RS14180 0.11 +7.9
2,636,921 - SGL_RS14180 0.12 +8.1
2,636,923 - SGL_RS14180 0.12 +7.9
2,637,146 - SGL_RS14180 0.40 +7.6
2,637,169 + SGL_RS14180 0.43 +8.8
2,637,258 - SGL_RS14180 0.54 +7.9
2,637,343 + SGL_RS14180 0.64 +8.1
2,637,368 - SGL_RS14180 0.67 +8.0
2,637,413 - SGL_RS14180 0.73 +7.7
2,637,632 - +8.8
2,637,706 - +4.6
2,637,976 + SGL_RS14185 0.29 +7.6
2,637,989 + SGL_RS14185 0.30 +7.3
2,638,077 - SGL_RS14185 0.41 +7.5
2,638,204 - SGL_RS14185 0.57 +6.4
2,638,306 - SGL_RS14185 0.70 +7.6
2,638,316 + SGL_RS14185 0.71 +6.7

Or see this region's nucleotide sequence