Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13790

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13785 and SGL_RS13790 are separated by 122 nucleotidesSGL_RS13790 and SGL_RS13795 are separated by 193 nucleotidesSGL_RS13795 and SGL_RS13800 are separated by 62 nucleotides SGL_RS13785: SGL_RS13785 - pyridoxal phosphate-dependent aminotransferase, at 2,558,820 to 2,559,989 _RS13785 SGL_RS13790: SGL_RS13790 - citrate synthase, at 2,560,112 to 2,561,305 _RS13790 SGL_RS13795: SGL_RS13795 - phosphohistidine phosphatase SixA, at 2,561,499 to 2,561,993 _RS13795 SGL_RS13800: SGL_RS13800 - alpha/beta hydrolase, at 2,562,056 to 2,562,859 _RS13800 Position (kb) 2560 2561 2562Strain fitness (log2 ratio) -1 0 1at 2560.130 kb on - strandat 2561.378 kb on + strandat 2561.435 kb on + strandat 2561.435 kb on + strandat 2561.443 kb on - strandat 2561.447 kb on + strandat 2561.447 kb on + strandat 2561.455 kb on - strandat 2561.505 kb on - strandat 2561.511 kb on + strandat 2561.896 kb on + strand, within SGL_RS13795at 2561.944 kb on + strandat 2561.954 kb on + strandat 2562.258 kb on - strand, within SGL_RS13800

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,560,130 - +1.6
2,561,378 + -0.9
2,561,435 + -0.7
2,561,435 + -1.4
2,561,443 - +0.3
2,561,447 + -0.7
2,561,447 + -0.8
2,561,455 - -0.3
2,561,505 - -0.3
2,561,511 + +0.5
2,561,896 + SGL_RS13795 0.80 +0.2
2,561,944 + +0.6
2,561,954 + +0.6
2,562,258 - SGL_RS13800 0.25 +0.8

Or see this region's nucleotide sequence