Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13720

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13710 and SGL_RS13715 are separated by 145 nucleotidesSGL_RS13715 and SGL_RS13720 are separated by 39 nucleotidesSGL_RS13720 and SGL_RS13725 are separated by 103 nucleotides SGL_RS13710: SGL_RS13710 - DUF445 domain-containing protein, at 2,545,122 to 2,546,381 _RS13710 SGL_RS13715: SGL_RS13715 - thioesterase family protein, at 2,546,527 to 2,547,027 _RS13715 SGL_RS13720: SGL_RS13720 - o-succinylbenzoate synthase, at 2,547,067 to 2,548,029 _RS13720 SGL_RS13725: SGL_RS13725 - peptidylprolyl isomerase, at 2,548,133 to 2,549,341 _RS13725 Position (kb) 2547 2548 2549Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2546.119 kb on - strand, within SGL_RS13710at 2546.288 kb on - strandat 2546.348 kb on - strandat 2547.147 kb on - strandat 2547.156 kb on + strandat 2547.163 kb on + strandat 2547.414 kb on - strand, within SGL_RS13720at 2547.769 kb on + strand, within SGL_RS13720at 2547.803 kb on + strand, within SGL_RS13720at 2547.974 kb on + strandat 2547.974 kb on + strandat 2548.048 kb on + strandat 2548.166 kb on + strandat 2548.271 kb on + strand, within SGL_RS13725at 2548.394 kb on - strand, within SGL_RS13725at 2548.435 kb on - strand, within SGL_RS13725at 2548.458 kb on - strand, within SGL_RS13725at 2548.504 kb on + strand, within SGL_RS13725at 2548.671 kb on + strand, within SGL_RS13725at 2549.004 kb on + strand, within SGL_RS13725

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,546,119 - SGL_RS13710 0.79 -2.6
2,546,288 - +0.1
2,546,348 - -3.2
2,547,147 - +1.5
2,547,156 + +0.8
2,547,163 + -0.1
2,547,414 - SGL_RS13720 0.36 -0.3
2,547,769 + SGL_RS13720 0.73 -0.8
2,547,803 + SGL_RS13720 0.76 +2.1
2,547,974 + -0.4
2,547,974 + +0.6
2,548,048 + -0.6
2,548,166 + -0.3
2,548,271 + SGL_RS13725 0.11 -0.8
2,548,394 - SGL_RS13725 0.22 -1.6
2,548,435 - SGL_RS13725 0.25 -0.6
2,548,458 - SGL_RS13725 0.27 -1.8
2,548,504 + SGL_RS13725 0.31 -0.6
2,548,671 + SGL_RS13725 0.44 +0.4
2,549,004 + SGL_RS13725 0.72 -1.7

Or see this region's nucleotide sequence