Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13500

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13495 and SGL_RS13500 are separated by 187 nucleotidesSGL_RS13500 and SGL_RS13505 are separated by 100 nucleotidesSGL_RS13505 and SGL_RS13510 are separated by 65 nucleotides SGL_RS13495: SGL_RS13495 - AarF/ABC1/UbiB kinase family protein, at 2,495,493 to 2,497,538 _RS13495 SGL_RS13500: SGL_RS13500 - ATP-dependent DNA helicase RecG, at 2,497,726 to 2,500,221 _RS13500 SGL_RS13505: SGL_RS13505 - signal peptide peptidase SppA, at 2,500,322 to 2,501,155 _RS13505 SGL_RS13510: SGL_RS13510 - transglycosylase domain-containing protein, at 2,501,221 to 2,503,878 _RS13510 Position (kb) 2497 2498 2499 2500 2501Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2496.743 kb on - strand, within SGL_RS13495at 2496.815 kb on - strand, within SGL_RS13495at 2496.865 kb on + strand, within SGL_RS13495at 2496.928 kb on - strand, within SGL_RS13495at 2496.978 kb on - strand, within SGL_RS13495at 2496.982 kb on + strand, within SGL_RS13495at 2496.983 kb on + strand, within SGL_RS13495at 2497.074 kb on + strand, within SGL_RS13495at 2497.652 kb on - strandat 2497.695 kb on + strandat 2497.726 kb on + strandat 2497.980 kb on + strand, within SGL_RS13500at 2498.089 kb on + strand, within SGL_RS13500at 2498.117 kb on + strand, within SGL_RS13500at 2498.304 kb on - strand, within SGL_RS13500at 2498.331 kb on - strand, within SGL_RS13500at 2499.425 kb on + strand, within SGL_RS13500at 2499.431 kb on + strand, within SGL_RS13500at 2499.439 kb on - strand, within SGL_RS13500at 2499.449 kb on + strand, within SGL_RS13500at 2499.457 kb on - strand, within SGL_RS13500at 2499.570 kb on - strand, within SGL_RS13500at 2500.417 kb on - strand, within SGL_RS13505at 2500.462 kb on - strand, within SGL_RS13505at 2500.487 kb on + strand, within SGL_RS13505at 2500.495 kb on - strand, within SGL_RS13505at 2500.580 kb on + strand, within SGL_RS13505at 2500.813 kb on + strand, within SGL_RS13505at 2500.997 kb on - strand, within SGL_RS13505at 2501.012 kb on - strand, within SGL_RS13505at 2501.014 kb on + strand, within SGL_RS13505at 2501.127 kb on + strandat 2501.201 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,496,743 - SGL_RS13495 0.61 -1.4
2,496,815 - SGL_RS13495 0.65 -3.3
2,496,865 + SGL_RS13495 0.67 -3.0
2,496,928 - SGL_RS13495 0.70 -1.9
2,496,978 - SGL_RS13495 0.73 -2.1
2,496,982 + SGL_RS13495 0.73 -2.0
2,496,983 + SGL_RS13495 0.73 -1.2
2,497,074 + SGL_RS13495 0.77 -1.5
2,497,652 - -4.0
2,497,695 + -1.4
2,497,726 + -0.5
2,497,980 + SGL_RS13500 0.10 -4.0
2,498,089 + SGL_RS13500 0.15 -2.9
2,498,117 + SGL_RS13500 0.16 -1.3
2,498,304 - SGL_RS13500 0.23 -2.6
2,498,331 - SGL_RS13500 0.24 -1.7
2,499,425 + SGL_RS13500 0.68 +1.5
2,499,431 + SGL_RS13500 0.68 -3.1
2,499,439 - SGL_RS13500 0.69 -2.2
2,499,449 + SGL_RS13500 0.69 -3.9
2,499,457 - SGL_RS13500 0.69 +0.8
2,499,570 - SGL_RS13500 0.74 -0.5
2,500,417 - SGL_RS13505 0.11 +0.4
2,500,462 - SGL_RS13505 0.17 +0.4
2,500,487 + SGL_RS13505 0.20 +0.0
2,500,495 - SGL_RS13505 0.21 +1.8
2,500,580 + SGL_RS13505 0.31 +0.8
2,500,813 + SGL_RS13505 0.59 +2.0
2,500,997 - SGL_RS13505 0.81 +0.9
2,501,012 - SGL_RS13505 0.83 +1.4
2,501,014 + SGL_RS13505 0.83 +0.7
2,501,127 + +0.8
2,501,201 - -0.9

Or see this region's nucleotide sequence