Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13495 and SGL_RS13500 are separated by 187 nucleotides SGL_RS13500 and SGL_RS13505 are separated by 100 nucleotides SGL_RS13505 and SGL_RS13510 are separated by 65 nucleotides
SGL_RS13495: SGL_RS13495 - AarF/ABC1/UbiB kinase family protein, at 2,495,493 to 2,497,538
_RS13495
SGL_RS13500: SGL_RS13500 - ATP-dependent DNA helicase RecG, at 2,497,726 to 2,500,221
_RS13500
SGL_RS13505: SGL_RS13505 - signal peptide peptidase SppA, at 2,500,322 to 2,501,155
_RS13505
SGL_RS13510: SGL_RS13510 - transglycosylase domain-containing protein, at 2,501,221 to 2,503,878
_RS13510
Position (kb)
2497
2498
2499
2500
2501 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2496.743 kb on - strand, within SGL_RS13495 at 2496.815 kb on - strand, within SGL_RS13495 at 2496.865 kb on + strand, within SGL_RS13495 at 2496.928 kb on - strand, within SGL_RS13495 at 2496.978 kb on - strand, within SGL_RS13495 at 2496.982 kb on + strand, within SGL_RS13495 at 2496.983 kb on + strand, within SGL_RS13495 at 2497.074 kb on + strand, within SGL_RS13495 at 2497.652 kb on - strand at 2497.695 kb on + strand at 2497.726 kb on + strand at 2497.980 kb on + strand, within SGL_RS13500 at 2498.089 kb on + strand, within SGL_RS13500 at 2498.117 kb on + strand, within SGL_RS13500 at 2498.304 kb on - strand, within SGL_RS13500 at 2498.331 kb on - strand, within SGL_RS13500 at 2499.425 kb on + strand, within SGL_RS13500 at 2499.431 kb on + strand, within SGL_RS13500 at 2499.439 kb on - strand, within SGL_RS13500 at 2499.449 kb on + strand, within SGL_RS13500 at 2499.457 kb on - strand, within SGL_RS13500 at 2499.570 kb on - strand, within SGL_RS13500 at 2500.417 kb on - strand, within SGL_RS13505 at 2500.462 kb on - strand, within SGL_RS13505 at 2500.487 kb on + strand, within SGL_RS13505 at 2500.495 kb on - strand, within SGL_RS13505 at 2500.580 kb on + strand, within SGL_RS13505 at 2500.813 kb on + strand, within SGL_RS13505 at 2500.997 kb on - strand, within SGL_RS13505 at 2501.012 kb on - strand, within SGL_RS13505 at 2501.014 kb on + strand, within SGL_RS13505 at 2501.127 kb on + strand at 2501.201 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,496,743 - SGL_RS13495 0.61 -1.4 2,496,815 - SGL_RS13495 0.65 -3.3 2,496,865 + SGL_RS13495 0.67 -3.0 2,496,928 - SGL_RS13495 0.70 -1.9 2,496,978 - SGL_RS13495 0.73 -2.1 2,496,982 + SGL_RS13495 0.73 -2.0 2,496,983 + SGL_RS13495 0.73 -1.2 2,497,074 + SGL_RS13495 0.77 -1.5 2,497,652 - -4.0 2,497,695 + -1.4 2,497,726 + -0.5 2,497,980 + SGL_RS13500 0.10 -4.0 2,498,089 + SGL_RS13500 0.15 -2.9 2,498,117 + SGL_RS13500 0.16 -1.3 2,498,304 - SGL_RS13500 0.23 -2.6 2,498,331 - SGL_RS13500 0.24 -1.7 2,499,425 + SGL_RS13500 0.68 +1.5 2,499,431 + SGL_RS13500 0.68 -3.1 2,499,439 - SGL_RS13500 0.69 -2.2 2,499,449 + SGL_RS13500 0.69 -3.9 2,499,457 - SGL_RS13500 0.69 +0.8 2,499,570 - SGL_RS13500 0.74 -0.5 2,500,417 - SGL_RS13505 0.11 +0.4 2,500,462 - SGL_RS13505 0.17 +0.4 2,500,487 + SGL_RS13505 0.20 +0.0 2,500,495 - SGL_RS13505 0.21 +1.8 2,500,580 + SGL_RS13505 0.31 +0.8 2,500,813 + SGL_RS13505 0.59 +2.0 2,500,997 - SGL_RS13505 0.81 +0.9 2,501,012 - SGL_RS13505 0.83 +1.4 2,501,014 + SGL_RS13505 0.83 +0.7 2,501,127 + +0.8 2,501,201 - -0.9
Or see this region's nucleotide sequence