Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13495

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13490 and SGL_RS13495 are separated by 103 nucleotidesSGL_RS13495 and SGL_RS13500 are separated by 187 nucleotides SGL_RS13490: SGL_RS13490 - aspartate aminotransferase, at 2,494,205 to 2,495,389 _RS13490 SGL_RS13495: SGL_RS13495 - AarF/ABC1/UbiB kinase family protein, at 2,495,493 to 2,497,538 _RS13495 SGL_RS13500: SGL_RS13500 - ATP-dependent DNA helicase RecG, at 2,497,726 to 2,500,221 _RS13500 Position (kb) 2495 2496 2497 2498Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2494.757 kb on + strand, within SGL_RS13490at 2495.050 kb on - strand, within SGL_RS13490at 2495.050 kb on - strand, within SGL_RS13490at 2495.050 kb on - strand, within SGL_RS13490at 2495.056 kb on + strand, within SGL_RS13490at 2495.350 kb on - strandat 2495.436 kb on + strandat 2495.436 kb on + strandat 2495.550 kb on - strandat 2495.667 kb on - strandat 2495.669 kb on + strandat 2495.677 kb on - strandat 2495.785 kb on + strand, within SGL_RS13495at 2495.793 kb on - strand, within SGL_RS13495at 2495.793 kb on - strand, within SGL_RS13495at 2496.080 kb on + strand, within SGL_RS13495at 2496.317 kb on + strand, within SGL_RS13495at 2496.384 kb on - strand, within SGL_RS13495at 2496.440 kb on - strand, within SGL_RS13495at 2496.466 kb on - strand, within SGL_RS13495at 2496.647 kb on + strand, within SGL_RS13495at 2496.743 kb on - strand, within SGL_RS13495at 2496.815 kb on - strand, within SGL_RS13495at 2496.865 kb on + strand, within SGL_RS13495at 2496.928 kb on - strand, within SGL_RS13495at 2496.978 kb on - strand, within SGL_RS13495at 2496.982 kb on + strand, within SGL_RS13495at 2496.983 kb on + strand, within SGL_RS13495at 2497.074 kb on + strand, within SGL_RS13495at 2497.652 kb on - strandat 2497.695 kb on + strandat 2497.726 kb on + strandat 2497.980 kb on + strand, within SGL_RS13500at 2498.089 kb on + strand, within SGL_RS13500at 2498.117 kb on + strand, within SGL_RS13500at 2498.304 kb on - strand, within SGL_RS13500at 2498.331 kb on - strand, within SGL_RS13500

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,494,757 + SGL_RS13490 0.47 -3.0
2,495,050 - SGL_RS13490 0.71 +1.3
2,495,050 - SGL_RS13490 0.71 -0.4
2,495,050 - SGL_RS13490 0.71 -2.4
2,495,056 + SGL_RS13490 0.72 -2.7
2,495,350 - -0.7
2,495,436 + -1.0
2,495,436 + -1.0
2,495,550 - -1.1
2,495,667 - -3.8
2,495,669 + -2.7
2,495,677 - -2.7
2,495,785 + SGL_RS13495 0.14 -2.5
2,495,793 - SGL_RS13495 0.15 -2.6
2,495,793 - SGL_RS13495 0.15 -0.8
2,496,080 + SGL_RS13495 0.29 -1.4
2,496,317 + SGL_RS13495 0.40 -3.0
2,496,384 - SGL_RS13495 0.44 -3.7
2,496,440 - SGL_RS13495 0.46 -3.4
2,496,466 - SGL_RS13495 0.48 -3.8
2,496,647 + SGL_RS13495 0.56 -1.8
2,496,743 - SGL_RS13495 0.61 -1.4
2,496,815 - SGL_RS13495 0.65 -3.3
2,496,865 + SGL_RS13495 0.67 -3.0
2,496,928 - SGL_RS13495 0.70 -1.9
2,496,978 - SGL_RS13495 0.73 -2.1
2,496,982 + SGL_RS13495 0.73 -2.0
2,496,983 + SGL_RS13495 0.73 -1.2
2,497,074 + SGL_RS13495 0.77 -1.5
2,497,652 - -4.0
2,497,695 + -1.4
2,497,726 + -0.5
2,497,980 + SGL_RS13500 0.10 -4.0
2,498,089 + SGL_RS13500 0.15 -2.9
2,498,117 + SGL_RS13500 0.16 -1.3
2,498,304 - SGL_RS13500 0.23 -2.6
2,498,331 - SGL_RS13500 0.24 -1.7

Or see this region's nucleotide sequence