Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13335

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13330 and SGL_RS13335 overlap by 26 nucleotidesSGL_RS13335 and SGL_RS13340 overlap by 4 nucleotidesSGL_RS13340 and SGL_RS13345 are separated by 77 nucleotides SGL_RS13330: SGL_RS13330 - histidine--tRNA ligase, at 2,456,935 to 2,458,278 _RS13330 SGL_RS13335: SGL_RS13335 - hypothetical protein, at 2,458,253 to 2,459,377 _RS13335 SGL_RS13340: SGL_RS13340 - GNAT family N-acetyltransferase, at 2,459,374 to 2,460,282 _RS13340 SGL_RS13345: SGL_RS13345 - hypothetical protein, at 2,460,360 to 2,461,058 _RS13345 Position (kb) 2458 2459 2460Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2458.448 kb on + strand, within SGL_RS13335at 2458.485 kb on + strand, within SGL_RS13335at 2458.578 kb on + strand, within SGL_RS13335at 2458.667 kb on + strand, within SGL_RS13335at 2458.712 kb on - strand, within SGL_RS13335at 2458.951 kb on + strand, within SGL_RS13335at 2459.196 kb on - strand, within SGL_RS13335at 2459.315 kb on + strandat 2459.390 kb on - strandat 2459.407 kb on - strandat 2459.519 kb on - strand, within SGL_RS13340at 2459.519 kb on - strand, within SGL_RS13340at 2459.631 kb on - strand, within SGL_RS13340at 2459.785 kb on + strand, within SGL_RS13340at 2459.916 kb on - strand, within SGL_RS13340at 2459.944 kb on + strand, within SGL_RS13340at 2459.956 kb on + strand, within SGL_RS13340at 2459.964 kb on - strand, within SGL_RS13340at 2459.964 kb on - strand, within SGL_RS13340at 2459.964 kb on - strand, within SGL_RS13340at 2460.251 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,458,448 + SGL_RS13335 0.17 -0.7
2,458,485 + SGL_RS13335 0.21 -3.5
2,458,578 + SGL_RS13335 0.29 -4.0
2,458,667 + SGL_RS13335 0.37 -2.1
2,458,712 - SGL_RS13335 0.41 -2.6
2,458,951 + SGL_RS13335 0.62 -3.9
2,459,196 - SGL_RS13335 0.84 -3.4
2,459,315 + -3.1
2,459,390 - +1.0
2,459,407 - +0.6
2,459,519 - SGL_RS13340 0.16 -0.1
2,459,519 - SGL_RS13340 0.16 +0.0
2,459,631 - SGL_RS13340 0.28 -1.7
2,459,785 + SGL_RS13340 0.45 -1.0
2,459,916 - SGL_RS13340 0.60 +1.7
2,459,944 + SGL_RS13340 0.63 -0.9
2,459,956 + SGL_RS13340 0.64 -1.7
2,459,964 - SGL_RS13340 0.65 -0.8
2,459,964 - SGL_RS13340 0.65 +2.4
2,459,964 - SGL_RS13340 0.65 +1.7
2,460,251 + +0.8

Or see this region's nucleotide sequence