Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12435

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12430 and SGL_RS12435 are separated by 38 nucleotidesSGL_RS12435 and SGL_RS12440 are separated by 52 nucleotides SGL_RS12430: SGL_RS12430 - circadian clock protein KaiC, at 2,243,851 to 2,245,368 _RS12430 SGL_RS12435: SGL_RS12435 - PCP reductase family protein, at 2,245,407 to 2,245,583 _RS12435 SGL_RS12440: SGL_RS12440 - glycosyltransferase, at 2,245,636 to 2,246,631 _RS12440 Position (kb) 2245 2246Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2244.744 kb on + strand, within SGL_RS12430at 2244.865 kb on + strand, within SGL_RS12430at 2245.326 kb on - strandat 2245.533 kb on - strand, within SGL_RS12435at 2245.647 kb on - strandat 2245.761 kb on + strand, within SGL_RS12440at 2245.761 kb on + strand, within SGL_RS12440at 2245.779 kb on - strand, within SGL_RS12440at 2245.779 kb on - strand, within SGL_RS12440at 2246.031 kb on - strand, within SGL_RS12440at 2246.240 kb on + strand, within SGL_RS12440at 2246.301 kb on + strand, within SGL_RS12440at 2246.332 kb on + strand, within SGL_RS12440

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,244,744 + SGL_RS12430 0.59 -2.1
2,244,865 + SGL_RS12430 0.67 +3.5
2,245,326 - -2.7
2,245,533 - SGL_RS12435 0.71 -3.1
2,245,647 - -1.1
2,245,761 + SGL_RS12440 0.13 -4.1
2,245,761 + SGL_RS12440 0.13 -3.2
2,245,779 - SGL_RS12440 0.14 -1.6
2,245,779 - SGL_RS12440 0.14 -2.6
2,246,031 - SGL_RS12440 0.40 -1.1
2,246,240 + SGL_RS12440 0.61 -3.0
2,246,301 + SGL_RS12440 0.67 +1.1
2,246,332 + SGL_RS12440 0.70 -3.4

Or see this region's nucleotide sequence