Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12260

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12255 and SGL_RS12260 are separated by 25 nucleotidesSGL_RS12260 and SGL_RS12265 overlap by 1 nucleotides SGL_RS12255: SGL_RS12255 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 2,211,283 to 2,212,479 _RS12255 SGL_RS12260: SGL_RS12260 - serine hydrolase, at 2,212,505 to 2,213,707 _RS12260 SGL_RS12265: SGL_RS12265 - adenosylcobinamide-phosphate synthase CbiB, at 2,213,707 to 2,214,735 _RS12265 SGL_RS12270: SGL_RS12270 - peptide chain release factor 2, at 2,214,685 to 2,215,801 _RS12270 Position (kb) 2212 2213 2214Strain fitness (log2 ratio) -3 -2 -1 0 1at 2212.136 kb on + strand, within SGL_RS12255at 2212.219 kb on + strand, within SGL_RS12255at 2213.111 kb on + strand, within SGL_RS12260at 2213.523 kb on - strand, within SGL_RS12260at 2214.273 kb on - strand, within SGL_RS12265

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,212,136 + SGL_RS12255 0.71 +1.4
2,212,219 + SGL_RS12255 0.78 +1.4
2,213,111 + SGL_RS12260 0.50 -0.2
2,213,523 - SGL_RS12260 0.85 -3.0
2,214,273 - SGL_RS12265 0.55 +1.0

Or see this region's nucleotide sequence