Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12025

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12020 and SGL_RS12025 are separated by 99 nucleotidesSGL_RS12025 and SGL_RS12030 overlap by 4 nucleotides SGL_RS12020: SGL_RS12020 - NAD(P)H-binding protein, at 2,148,253 to 2,149,233 _RS12020 SGL_RS12025: SGL_RS12025 - NAD(+) kinase, at 2,149,333 to 2,150,250 _RS12025 SGL_RS12030: SGL_RS12030 - extracellular solute-binding protein, at 2,150,247 to 2,151,401 _RS12030 Position (kb) 2149 2150 2151Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2148.762 kb on + strand, within SGL_RS12020at 2148.823 kb on + strand, within SGL_RS12020at 2148.823 kb on + strand, within SGL_RS12020at 2148.823 kb on + strand, within SGL_RS12020at 2148.831 kb on - strand, within SGL_RS12020at 2148.831 kb on - strand, within SGL_RS12020at 2148.841 kb on - strand, within SGL_RS12020at 2148.851 kb on + strand, within SGL_RS12020at 2148.859 kb on - strand, within SGL_RS12020at 2149.055 kb on - strand, within SGL_RS12020at 2149.091 kb on - strand, within SGL_RS12020at 2149.166 kb on - strandat 2149.333 kb on + strandat 2149.421 kb on + strandat 2149.429 kb on - strand, within SGL_RS12025at 2149.542 kb on - strand, within SGL_RS12025at 2149.566 kb on + strand, within SGL_RS12025at 2149.576 kb on - strand, within SGL_RS12025at 2149.596 kb on - strand, within SGL_RS12025at 2149.615 kb on - strand, within SGL_RS12025at 2149.641 kb on - strand, within SGL_RS12025at 2149.669 kb on + strand, within SGL_RS12025at 2149.803 kb on - strand, within SGL_RS12025at 2150.074 kb on - strand, within SGL_RS12025at 2150.090 kb on + strand, within SGL_RS12025at 2150.108 kb on - strand, within SGL_RS12025at 2150.332 kb on - strandat 2150.332 kb on - strandat 2150.332 kb on - strandat 2150.339 kb on + strandat 2150.347 kb on - strandat 2150.379 kb on - strand, within SGL_RS12030at 2150.527 kb on + strand, within SGL_RS12030at 2150.528 kb on - strand, within SGL_RS12030at 2150.547 kb on - strand, within SGL_RS12030at 2150.658 kb on - strand, within SGL_RS12030at 2150.694 kb on + strand, within SGL_RS12030at 2150.749 kb on - strand, within SGL_RS12030at 2150.863 kb on + strand, within SGL_RS12030at 2150.953 kb on - strand, within SGL_RS12030at 2151.119 kb on + strand, within SGL_RS12030at 2151.139 kb on - strand, within SGL_RS12030at 2151.216 kb on - strand, within SGL_RS12030

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,148,762 + SGL_RS12020 0.52 +2.4
2,148,823 + SGL_RS12020 0.58 +1.6
2,148,823 + SGL_RS12020 0.58 +1.1
2,148,823 + SGL_RS12020 0.58 +2.1
2,148,831 - SGL_RS12020 0.59 +1.8
2,148,831 - SGL_RS12020 0.59 +1.2
2,148,841 - SGL_RS12020 0.60 +1.1
2,148,851 + SGL_RS12020 0.61 +2.5
2,148,859 - SGL_RS12020 0.62 -0.3
2,149,055 - SGL_RS12020 0.82 +2.1
2,149,091 - SGL_RS12020 0.85 +2.0
2,149,166 - +0.5
2,149,333 + -0.6
2,149,421 + +1.4
2,149,429 - SGL_RS12025 0.10 -3.5
2,149,542 - SGL_RS12025 0.23 -3.6
2,149,566 + SGL_RS12025 0.25 -3.4
2,149,576 - SGL_RS12025 0.26 -3.1
2,149,596 - SGL_RS12025 0.29 -1.2
2,149,615 - SGL_RS12025 0.31 -2.2
2,149,641 - SGL_RS12025 0.34 -2.6
2,149,669 + SGL_RS12025 0.37 -3.2
2,149,803 - SGL_RS12025 0.51 -3.3
2,150,074 - SGL_RS12025 0.81 -4.6
2,150,090 + SGL_RS12025 0.82 -0.2
2,150,108 - SGL_RS12025 0.84 -5.4
2,150,332 - -0.9
2,150,332 - -1.3
2,150,332 - -1.0
2,150,339 + -0.6
2,150,347 - -2.9
2,150,379 - SGL_RS12030 0.11 -2.6
2,150,527 + SGL_RS12030 0.24 -2.6
2,150,528 - SGL_RS12030 0.24 -0.0
2,150,547 - SGL_RS12030 0.26 -0.2
2,150,658 - SGL_RS12030 0.36 -0.0
2,150,694 + SGL_RS12030 0.39 -0.5
2,150,749 - SGL_RS12030 0.43 -0.6
2,150,863 + SGL_RS12030 0.53 -1.7
2,150,953 - SGL_RS12030 0.61 -0.6
2,151,119 + SGL_RS12030 0.75 -1.4
2,151,139 - SGL_RS12030 0.77 -1.6
2,151,216 - SGL_RS12030 0.84 -2.7

Or see this region's nucleotide sequence