Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS12020 and SGL_RS12025 are separated by 99 nucleotides SGL_RS12025 and SGL_RS12030 overlap by 4 nucleotides
SGL_RS12020: SGL_RS12020 - NAD(P)H-binding protein, at 2,148,253 to 2,149,233
_RS12020
SGL_RS12025: SGL_RS12025 - NAD(+) kinase, at 2,149,333 to 2,150,250
_RS12025
SGL_RS12030: SGL_RS12030 - extracellular solute-binding protein, at 2,150,247 to 2,151,401
_RS12030
Position (kb)
2149
2150
2151 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2148.762 kb on + strand, within SGL_RS12020 at 2148.823 kb on + strand, within SGL_RS12020 at 2148.823 kb on + strand, within SGL_RS12020 at 2148.823 kb on + strand, within SGL_RS12020 at 2148.831 kb on - strand, within SGL_RS12020 at 2148.831 kb on - strand, within SGL_RS12020 at 2148.841 kb on - strand, within SGL_RS12020 at 2148.851 kb on + strand, within SGL_RS12020 at 2148.859 kb on - strand, within SGL_RS12020 at 2149.055 kb on - strand, within SGL_RS12020 at 2149.091 kb on - strand, within SGL_RS12020 at 2149.166 kb on - strand at 2149.333 kb on + strand at 2149.421 kb on + strand at 2149.429 kb on - strand, within SGL_RS12025 at 2149.542 kb on - strand, within SGL_RS12025 at 2149.566 kb on + strand, within SGL_RS12025 at 2149.576 kb on - strand, within SGL_RS12025 at 2149.596 kb on - strand, within SGL_RS12025 at 2149.615 kb on - strand, within SGL_RS12025 at 2149.641 kb on - strand, within SGL_RS12025 at 2149.669 kb on + strand, within SGL_RS12025 at 2149.803 kb on - strand, within SGL_RS12025 at 2150.074 kb on - strand, within SGL_RS12025 at 2150.090 kb on + strand, within SGL_RS12025 at 2150.108 kb on - strand, within SGL_RS12025 at 2150.332 kb on - strand at 2150.332 kb on - strand at 2150.332 kb on - strand at 2150.339 kb on + strand at 2150.347 kb on - strand at 2150.379 kb on - strand, within SGL_RS12030 at 2150.527 kb on + strand, within SGL_RS12030 at 2150.528 kb on - strand, within SGL_RS12030 at 2150.547 kb on - strand, within SGL_RS12030 at 2150.658 kb on - strand, within SGL_RS12030 at 2150.694 kb on + strand, within SGL_RS12030 at 2150.749 kb on - strand, within SGL_RS12030 at 2150.863 kb on + strand, within SGL_RS12030 at 2150.953 kb on - strand, within SGL_RS12030 at 2151.119 kb on + strand, within SGL_RS12030 at 2151.139 kb on - strand, within SGL_RS12030 at 2151.216 kb on - strand, within SGL_RS12030
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,148,762 + SGL_RS12020 0.52 +2.4 2,148,823 + SGL_RS12020 0.58 +1.6 2,148,823 + SGL_RS12020 0.58 +1.1 2,148,823 + SGL_RS12020 0.58 +2.1 2,148,831 - SGL_RS12020 0.59 +1.8 2,148,831 - SGL_RS12020 0.59 +1.2 2,148,841 - SGL_RS12020 0.60 +1.1 2,148,851 + SGL_RS12020 0.61 +2.5 2,148,859 - SGL_RS12020 0.62 -0.3 2,149,055 - SGL_RS12020 0.82 +2.1 2,149,091 - SGL_RS12020 0.85 +2.0 2,149,166 - +0.5 2,149,333 + -0.6 2,149,421 + +1.4 2,149,429 - SGL_RS12025 0.10 -3.5 2,149,542 - SGL_RS12025 0.23 -3.6 2,149,566 + SGL_RS12025 0.25 -3.4 2,149,576 - SGL_RS12025 0.26 -3.1 2,149,596 - SGL_RS12025 0.29 -1.2 2,149,615 - SGL_RS12025 0.31 -2.2 2,149,641 - SGL_RS12025 0.34 -2.6 2,149,669 + SGL_RS12025 0.37 -3.2 2,149,803 - SGL_RS12025 0.51 -3.3 2,150,074 - SGL_RS12025 0.81 -4.6 2,150,090 + SGL_RS12025 0.82 -0.2 2,150,108 - SGL_RS12025 0.84 -5.4 2,150,332 - -0.9 2,150,332 - -1.3 2,150,332 - -1.0 2,150,339 + -0.6 2,150,347 - -2.9 2,150,379 - SGL_RS12030 0.11 -2.6 2,150,527 + SGL_RS12030 0.24 -2.6 2,150,528 - SGL_RS12030 0.24 -0.0 2,150,547 - SGL_RS12030 0.26 -0.2 2,150,658 - SGL_RS12030 0.36 -0.0 2,150,694 + SGL_RS12030 0.39 -0.5 2,150,749 - SGL_RS12030 0.43 -0.6 2,150,863 + SGL_RS12030 0.53 -1.7 2,150,953 - SGL_RS12030 0.61 -0.6 2,151,119 + SGL_RS12030 0.75 -1.4 2,151,139 - SGL_RS12030 0.77 -1.6 2,151,216 - SGL_RS12030 0.84 -2.7
Or see this region's nucleotide sequence