Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11485

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11480 and SGL_RS11485 are separated by 170 nucleotidesSGL_RS11485 and SGL_RS11490 are separated by 263 nucleotidesSGL_RS11490 and SGL_RS11495 are separated by 41 nucleotides SGL_RS11480: SGL_RS11480 - glycosyltransferase, at 2,032,951 to 2,034,123 _RS11480 SGL_RS11485: SGL_RS11485 - inorganic diphosphatase, at 2,034,294 to 2,034,803 _RS11485 SGL_RS11490: SGL_RS11490 - NAD(P)H-quinone oxidoreductase subunit M, at 2,035,067 to 2,035,432 _RS11490 SGL_RS11495: SGL_RS11495 - Ig-like domain-containing protein, at 2,035,474 to 2,036,850 _RS11495 Position (kb) 2034 2035Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2033.302 kb on + strand, within SGL_RS11480at 2033.409 kb on - strand, within SGL_RS11480at 2033.487 kb on - strand, within SGL_RS11480at 2033.514 kb on + strand, within SGL_RS11480at 2033.514 kb on + strand, within SGL_RS11480at 2033.522 kb on - strand, within SGL_RS11480at 2033.623 kb on + strand, within SGL_RS11480at 2033.670 kb on - strand, within SGL_RS11480at 2033.752 kb on + strand, within SGL_RS11480at 2033.945 kb on + strand, within SGL_RS11480at 2034.066 kb on + strandat 2034.089 kb on - strandat 2034.154 kb on + strandat 2034.206 kb on + strandat 2034.216 kb on - strandat 2034.772 kb on + strandat 2034.819 kb on + strandat 2034.905 kb on - strandat 2035.464 kb on + strandat 2035.464 kb on + strandat 2035.472 kb on - strandat 2035.472 kb on - strandat 2035.472 kb on - strandat 2035.474 kb on + strandat 2035.530 kb on + strandat 2035.538 kb on - strandat 2035.543 kb on - strandat 2035.547 kb on + strandat 2035.687 kb on + strand, within SGL_RS11495at 2035.708 kb on - strand, within SGL_RS11495

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,033,302 + SGL_RS11480 0.30 -1.6
2,033,409 - SGL_RS11480 0.39 +0.1
2,033,487 - SGL_RS11480 0.46 -0.4
2,033,514 + SGL_RS11480 0.48 -0.4
2,033,514 + SGL_RS11480 0.48 -0.1
2,033,522 - SGL_RS11480 0.49 -1.2
2,033,623 + SGL_RS11480 0.57 -0.2
2,033,670 - SGL_RS11480 0.61 -1.5
2,033,752 + SGL_RS11480 0.68 -0.5
2,033,945 + SGL_RS11480 0.85 -1.2
2,034,066 + -0.8
2,034,089 - +0.2
2,034,154 + -0.8
2,034,206 + +3.2
2,034,216 - -0.4
2,034,772 + +1.0
2,034,819 + -0.0
2,034,905 - -0.1
2,035,464 + -0.3
2,035,464 + -2.0
2,035,472 - -0.1
2,035,472 - -2.1
2,035,472 - -1.3
2,035,474 + -2.3
2,035,530 + -3.4
2,035,538 - +0.1
2,035,543 - -2.7
2,035,547 + -2.7
2,035,687 + SGL_RS11495 0.15 -1.7
2,035,708 - SGL_RS11495 0.17 -2.7

Or see this region's nucleotide sequence