Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11300

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11290 and SGL_RS11295 are separated by 245 nucleotidesSGL_RS11295 and SGL_RS11300 are separated by 202 nucleotidesSGL_RS11300 and SGL_RS11305 are separated by 8 nucleotides SGL_RS11290: SGL_RS11290 - phosphoenolpyruvate carboxylase, at 1,994,147 to 1,997,251 _RS11290 SGL_RS11295: SGL_RS11295 - hypothetical protein, at 1,997,497 to 1,997,790 _RS11295 SGL_RS11300: SGL_RS11300 - NfeD family protein, at 1,997,993 to 1,998,451 _RS11300 SGL_RS11305: SGL_RS11305 - carboxylating nicotinate-nucleotide diphosphorylase, at 1,998,460 to 1,999,347 _RS11305 Position (kb) 1997 1998 1999Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1997.330 kb on - strandat 1997.906 kb on + strandat 1997.907 kb on - strandat 1998.029 kb on + strandat 1998.032 kb on - strandat 1998.039 kb on - strand, within SGL_RS11300at 1998.306 kb on - strand, within SGL_RS11300at 1998.490 kb on + strandat 1998.498 kb on - strandat 1998.508 kb on - strandat 1998.859 kb on + strand, within SGL_RS11305at 1998.902 kb on + strand, within SGL_RS11305at 1998.967 kb on + strand, within SGL_RS11305at 1998.975 kb on - strand, within SGL_RS11305at 1998.975 kb on - strand, within SGL_RS11305at 1998.975 kb on - strand, within SGL_RS11305at 1999.100 kb on + strand, within SGL_RS11305at 1999.110 kb on - strand, within SGL_RS11305at 1999.234 kb on + strand, within SGL_RS11305

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,997,330 - -1.8
1,997,906 + -1.4
1,997,907 - -2.7
1,998,029 + +0.6
1,998,032 - -5.0
1,998,039 - SGL_RS11300 0.10 -1.5
1,998,306 - SGL_RS11300 0.68 -1.3
1,998,490 + +0.8
1,998,498 - -0.5
1,998,508 - +0.3
1,998,859 + SGL_RS11305 0.45 -1.4
1,998,902 + SGL_RS11305 0.50 +0.2
1,998,967 + SGL_RS11305 0.57 -2.1
1,998,975 - SGL_RS11305 0.58 -1.8
1,998,975 - SGL_RS11305 0.58 +0.0
1,998,975 - SGL_RS11305 0.58 -2.1
1,999,100 + SGL_RS11305 0.72 +0.5
1,999,110 - SGL_RS11305 0.73 +0.0
1,999,234 + SGL_RS11305 0.87 -1.7

Or see this region's nucleotide sequence