Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11285

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11280 and SGL_RS11285 are separated by 102 nucleotidesSGL_RS11285 and SGL_RS11290 are separated by 101 nucleotides SGL_RS11280: SGL_RS11280 - serine/threonine-protein kinase, at 1,991,550 to 1,993,274 _RS11280 SGL_RS11285: SGL_RS11285 - response regulator transcription factor, at 1,993,377 to 1,994,045 _RS11285 SGL_RS11290: SGL_RS11290 - phosphoenolpyruvate carboxylase, at 1,994,147 to 1,997,251 _RS11290 Position (kb) 1993 1994 1995Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 1992.448 kb on + strand, within SGL_RS11280at 1992.490 kb on + strand, within SGL_RS11280at 1992.498 kb on - strand, within SGL_RS11280at 1992.521 kb on + strand, within SGL_RS11280at 1992.529 kb on - strand, within SGL_RS11280at 1992.649 kb on + strand, within SGL_RS11280at 1992.752 kb on - strand, within SGL_RS11280at 1992.768 kb on + strand, within SGL_RS11280at 1992.779 kb on + strand, within SGL_RS11280at 1992.784 kb on + strand, within SGL_RS11280at 1992.921 kb on + strand, within SGL_RS11280at 1992.961 kb on - strand, within SGL_RS11280at 1992.972 kb on + strand, within SGL_RS11280at 1993.010 kb on - strand, within SGL_RS11280at 1993.070 kb on - strand, within SGL_RS11280at 1993.082 kb on + strand, within SGL_RS11280at 1993.086 kb on - strand, within SGL_RS11280at 1993.274 kb on + strandat 1993.365 kb on + strandat 1993.402 kb on + strandat 1993.464 kb on + strand, within SGL_RS11285at 1994.046 kb on + strandat 1994.105 kb on - strandat 1994.115 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,992,448 + SGL_RS11280 0.52 -1.1
1,992,490 + SGL_RS11280 0.54 +0.4
1,992,498 - SGL_RS11280 0.55 -0.0
1,992,521 + SGL_RS11280 0.56 -0.7
1,992,529 - SGL_RS11280 0.57 -0.5
1,992,649 + SGL_RS11280 0.64 -0.2
1,992,752 - SGL_RS11280 0.70 -0.3
1,992,768 + SGL_RS11280 0.71 +0.0
1,992,779 + SGL_RS11280 0.71 +0.2
1,992,784 + SGL_RS11280 0.72 -2.3
1,992,921 + SGL_RS11280 0.79 -0.2
1,992,961 - SGL_RS11280 0.82 +0.8
1,992,972 + SGL_RS11280 0.82 -2.1
1,993,010 - SGL_RS11280 0.85 +0.0
1,993,070 - SGL_RS11280 0.88 -0.2
1,993,082 + SGL_RS11280 0.89 +0.4
1,993,086 - SGL_RS11280 0.89 +0.2
1,993,274 + -0.0
1,993,365 + -0.8
1,993,402 + +0.0
1,993,464 + SGL_RS11285 0.13 +1.5
1,994,046 + +4.1
1,994,105 - +5.8
1,994,115 - +2.5

Or see this region's nucleotide sequence