Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11085

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11080 and SGL_RS11085 are separated by 145 nucleotidesSGL_RS11085 and SGL_RS20205 are separated by 275 nucleotidesSGL_RS20205 and SGL_RS11090 are separated by 240 nucleotides SGL_RS11080: SGL_RS11080 - glycerol-3-phosphate dehydrogenase, at 1,945,518 to 1,947,179 _RS11080 SGL_RS11085: SGL_RS11085 - glucosylglycerol-phosphate synthase, at 1,947,325 to 1,948,824 _RS11085 SGL_RS20205: SGL_RS20205 - glucosylglycerol biosynthesis transcriptional repressor GgpR, at 1,949,100 to 1,949,372 _RS20205 SGL_RS11090: SGL_RS11090 - glucosylglycerol hydrolase, at 1,949,613 to 1,952,270 _RS11090 Position (kb) 1947 1948 1949Strain fitness (log2 ratio) -2 -1 0 1at 1946.369 kb on - strand, within SGL_RS11080at 1946.394 kb on + strand, within SGL_RS11080at 1946.484 kb on + strand, within SGL_RS11080at 1946.634 kb on - strand, within SGL_RS11080at 1946.634 kb on - strand, within SGL_RS11080at 1946.658 kb on - strand, within SGL_RS11080at 1946.697 kb on + strand, within SGL_RS11080at 1946.877 kb on + strand, within SGL_RS11080at 1947.068 kb on + strandat 1947.093 kb on + strandat 1947.101 kb on - strandat 1947.209 kb on - strandat 1947.358 kb on + strandat 1947.514 kb on + strand, within SGL_RS11085at 1947.565 kb on + strand, within SGL_RS11085at 1947.573 kb on - strand, within SGL_RS11085at 1947.573 kb on - strand, within SGL_RS11085at 1947.619 kb on + strand, within SGL_RS11085at 1947.646 kb on - strand, within SGL_RS11085at 1947.689 kb on - strand, within SGL_RS11085at 1947.691 kb on + strand, within SGL_RS11085at 1947.691 kb on + strand, within SGL_RS11085at 1947.691 kb on + strand, within SGL_RS11085at 1947.699 kb on - strand, within SGL_RS11085at 1947.701 kb on + strand, within SGL_RS11085at 1947.711 kb on - strand, within SGL_RS11085at 1947.837 kb on + strand, within SGL_RS11085at 1947.850 kb on + strand, within SGL_RS11085at 1948.083 kb on + strand, within SGL_RS11085at 1948.263 kb on + strand, within SGL_RS11085at 1948.271 kb on - strand, within SGL_RS11085at 1948.350 kb on + strand, within SGL_RS11085at 1948.378 kb on - strand, within SGL_RS11085at 1948.379 kb on + strand, within SGL_RS11085at 1948.385 kb on - strand, within SGL_RS11085at 1948.385 kb on - strand, within SGL_RS11085at 1948.385 kb on - strand, within SGL_RS11085at 1948.385 kb on - strand, within SGL_RS11085at 1948.592 kb on + strand, within SGL_RS11085at 1948.610 kb on - strand, within SGL_RS11085at 1948.797 kb on + strandat 1948.805 kb on - strandat 1949.128 kb on - strand, within SGL_RS20205at 1949.536 kb on + strandat 1949.536 kb on + strandat 1949.554 kb on - strandat 1949.565 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,946,369 - SGL_RS11080 0.51 -1.3
1,946,394 + SGL_RS11080 0.53 +0.3
1,946,484 + SGL_RS11080 0.58 -1.2
1,946,634 - SGL_RS11080 0.67 -0.7
1,946,634 - SGL_RS11080 0.67 +0.1
1,946,658 - SGL_RS11080 0.69 -1.3
1,946,697 + SGL_RS11080 0.71 -1.5
1,946,877 + SGL_RS11080 0.82 -0.3
1,947,068 + +0.3
1,947,093 + -1.3
1,947,101 - -1.6
1,947,209 - +0.7
1,947,358 + -0.2
1,947,514 + SGL_RS11085 0.13 -0.9
1,947,565 + SGL_RS11085 0.16 +0.5
1,947,573 - SGL_RS11085 0.17 -1.3
1,947,573 - SGL_RS11085 0.17 -0.4
1,947,619 + SGL_RS11085 0.20 -0.7
1,947,646 - SGL_RS11085 0.21 +0.3
1,947,689 - SGL_RS11085 0.24 -0.8
1,947,691 + SGL_RS11085 0.24 -1.0
1,947,691 + SGL_RS11085 0.24 +0.1
1,947,691 + SGL_RS11085 0.24 -0.7
1,947,699 - SGL_RS11085 0.25 -0.1
1,947,701 + SGL_RS11085 0.25 -0.8
1,947,711 - SGL_RS11085 0.26 -0.8
1,947,837 + SGL_RS11085 0.34 +1.2
1,947,850 + SGL_RS11085 0.35 +0.7
1,948,083 + SGL_RS11085 0.51 +0.3
1,948,263 + SGL_RS11085 0.63 +0.7
1,948,271 - SGL_RS11085 0.63 -0.2
1,948,350 + SGL_RS11085 0.68 -0.9
1,948,378 - SGL_RS11085 0.70 +0.2
1,948,379 + SGL_RS11085 0.70 -0.8
1,948,385 - SGL_RS11085 0.71 +0.4
1,948,385 - SGL_RS11085 0.71 -0.5
1,948,385 - SGL_RS11085 0.71 -0.1
1,948,385 - SGL_RS11085 0.71 +0.6
1,948,592 + SGL_RS11085 0.84 +0.4
1,948,610 - SGL_RS11085 0.86 -1.9
1,948,797 + -0.4
1,948,805 - +0.3
1,949,128 - SGL_RS20205 0.10 +0.4
1,949,536 + -1.6
1,949,536 + -0.6
1,949,554 - +1.3
1,949,565 - -0.0

Or see this region's nucleotide sequence