Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10870

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS10865 and SGL_RS10870 are separated by 100 nucleotidesSGL_RS10870 and SGL_RS10875 are separated by 192 nucleotides SGL_RS10865: SGL_RS10865 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB, at 1,902,437 to 1,903,924 _RS10865 SGL_RS10870: SGL_RS10870 - penicillin-binding protein 1A, at 1,904,025 to 1,905,977 _RS10870 SGL_RS10875: SGL_RS10875 - NAD(P)H-hydrate dehydratase, at 1,906,170 to 1,907,744 _RS10875 Position (kb) 1904 1905 1906Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1903.994 kb on + strandat 1904.002 kb on - strandat 1904.092 kb on + strandat 1904.285 kb on + strand, within SGL_RS10870at 1904.293 kb on - strand, within SGL_RS10870at 1904.293 kb on - strand, within SGL_RS10870at 1904.425 kb on - strand, within SGL_RS10870at 1904.450 kb on - strand, within SGL_RS10870at 1904.481 kb on + strand, within SGL_RS10870at 1904.483 kb on - strand, within SGL_RS10870at 1904.488 kb on + strand, within SGL_RS10870at 1904.496 kb on - strand, within SGL_RS10870at 1904.496 kb on - strand, within SGL_RS10870at 1904.496 kb on - strand, within SGL_RS10870at 1904.549 kb on - strand, within SGL_RS10870at 1904.610 kb on - strand, within SGL_RS10870at 1904.708 kb on - strand, within SGL_RS10870at 1904.772 kb on + strand, within SGL_RS10870at 1904.925 kb on + strand, within SGL_RS10870at 1905.155 kb on - strand, within SGL_RS10870at 1905.205 kb on - strand, within SGL_RS10870at 1905.258 kb on + strand, within SGL_RS10870at 1905.584 kb on - strand, within SGL_RS10870at 1905.726 kb on - strand, within SGL_RS10870at 1905.857 kb on + strandat 1905.858 kb on + strandat 1905.931 kb on + strandat 1905.939 kb on - strandat 1905.953 kb on + strandat 1905.987 kb on - strandat 1905.987 kb on - strandat 1906.082 kb on + strandat 1906.118 kb on + strandat 1906.126 kb on - strandat 1906.242 kb on + strandat 1906.504 kb on + strand, within SGL_RS10875at 1906.733 kb on + strand, within SGL_RS10875at 1906.736 kb on - strand, within SGL_RS10875at 1906.748 kb on - strand, within SGL_RS10875at 1906.766 kb on - strand, within SGL_RS10875at 1906.800 kb on + strand, within SGL_RS10875at 1906.858 kb on - strand, within SGL_RS10875at 1906.870 kb on + strand, within SGL_RS10875at 1906.870 kb on + strand, within SGL_RS10875at 1906.933 kb on - strand, within SGL_RS10875

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
1,903,994 + -0.6
1,904,002 - -0.1
1,904,092 + -2.1
1,904,285 + SGL_RS10870 0.13 -1.6
1,904,293 - SGL_RS10870 0.14 -3.0
1,904,293 - SGL_RS10870 0.14 -3.4
1,904,425 - SGL_RS10870 0.20 -1.2
1,904,450 - SGL_RS10870 0.22 -2.3
1,904,481 + SGL_RS10870 0.23 -2.5
1,904,483 - SGL_RS10870 0.23 -1.7
1,904,488 + SGL_RS10870 0.24 -3.4
1,904,496 - SGL_RS10870 0.24 -2.8
1,904,496 - SGL_RS10870 0.24 -1.3
1,904,496 - SGL_RS10870 0.24 -2.9
1,904,549 - SGL_RS10870 0.27 -2.8
1,904,610 - SGL_RS10870 0.30 -4.4
1,904,708 - SGL_RS10870 0.35 -2.6
1,904,772 + SGL_RS10870 0.38 +2.2
1,904,925 + SGL_RS10870 0.46 -1.8
1,905,155 - SGL_RS10870 0.58 +0.5
1,905,205 - SGL_RS10870 0.60 -1.1
1,905,258 + SGL_RS10870 0.63 -2.1
1,905,584 - SGL_RS10870 0.80 -1.4
1,905,726 - SGL_RS10870 0.87 -2.0
1,905,857 + -2.5
1,905,858 + -1.8
1,905,931 + -0.7
1,905,939 - -4.1
1,905,953 + -3.2
1,905,987 - -1.5
1,905,987 - -0.4
1,906,082 + +0.3
1,906,118 + -0.3
1,906,126 - -0.5
1,906,242 + +0.7
1,906,504 + SGL_RS10875 0.21 -0.4
1,906,733 + SGL_RS10875 0.36 -1.0
1,906,736 - SGL_RS10875 0.36 -2.4
1,906,748 - SGL_RS10875 0.37 -0.6
1,906,766 - SGL_RS10875 0.38 -0.2
1,906,800 + SGL_RS10875 0.40 +0.8
1,906,858 - SGL_RS10875 0.44 -0.1
1,906,870 + SGL_RS10875 0.44 -0.7
1,906,870 + SGL_RS10875 0.44 -0.1
1,906,933 - SGL_RS10875 0.48 +0.9

Or see this region's nucleotide sequence