Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10610 and SGL_RS10615 are separated by 83 nucleotides SGL_RS10615 and SGL_RS10620 are separated by 59 nucleotides SGL_RS10620 and SGL_RS10625 are separated by 96 nucleotides
SGL_RS10610: SGL_RS10610 - mannose-1-phosphate guanylyltransferase, at 1,845,795 to 1,846,865
_RS10610
SGL_RS10615: SGL_RS10615 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 1,846,949 to 1,848,241
_RS10615
SGL_RS10620: SGL_RS10620 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 1,848,301 to 1,848,702
_RS10620
SGL_RS10625: SGL_RS10625 - HlyD family efflux transporter periplasmic adaptor subunit, at 1,848,799 to 1,850,550
_RS10625
Position (kb)
1846
1847
1848
1849 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1846.963 kb on + strand at 1847.228 kb on - strand, within SGL_RS10615 at 1847.287 kb on + strand, within SGL_RS10615 at 1847.434 kb on - strand, within SGL_RS10615 at 1847.468 kb on + strand, within SGL_RS10615 at 1847.468 kb on + strand, within SGL_RS10615 at 1847.504 kb on - strand, within SGL_RS10615 at 1847.619 kb on + strand, within SGL_RS10615 at 1847.649 kb on - strand, within SGL_RS10615 at 1847.671 kb on - strand, within SGL_RS10615 at 1847.718 kb on + strand, within SGL_RS10615 at 1847.794 kb on - strand, within SGL_RS10615 at 1848.164 kb on + strand at 1848.198 kb on + strand at 1848.246 kb on - strand at 1848.298 kb on + strand at 1848.306 kb on - strand at 1848.339 kb on - strand at 1848.393 kb on - strand, within SGL_RS10620 at 1848.566 kb on + strand, within SGL_RS10620 at 1848.566 kb on + strand, within SGL_RS10620 at 1848.574 kb on - strand, within SGL_RS10620 at 1848.671 kb on + strand at 1848.861 kb on - strand at 1849.044 kb on - strand, within SGL_RS10625 at 1849.056 kb on - strand, within SGL_RS10625 at 1849.230 kb on + strand, within SGL_RS10625 at 1849.235 kb on + strand, within SGL_RS10625
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,846,963 + +0.3 1,847,228 - SGL_RS10615 0.22 -2.6 1,847,287 + SGL_RS10615 0.26 -2.7 1,847,434 - SGL_RS10615 0.38 -3.8 1,847,468 + SGL_RS10615 0.40 -2.4 1,847,468 + SGL_RS10615 0.40 -1.1 1,847,504 - SGL_RS10615 0.43 -2.0 1,847,619 + SGL_RS10615 0.52 -0.7 1,847,649 - SGL_RS10615 0.54 -2.1 1,847,671 - SGL_RS10615 0.56 -1.3 1,847,718 + SGL_RS10615 0.59 -3.7 1,847,794 - SGL_RS10615 0.65 -2.0 1,848,164 + -2.0 1,848,198 + -2.4 1,848,246 - -1.0 1,848,298 + -0.5 1,848,306 - -1.2 1,848,339 - -1.4 1,848,393 - SGL_RS10620 0.23 -1.7 1,848,566 + SGL_RS10620 0.66 -2.0 1,848,566 + SGL_RS10620 0.66 -3.6 1,848,574 - SGL_RS10620 0.68 -4.6 1,848,671 + -0.9 1,848,861 - -1.2 1,849,044 - SGL_RS10625 0.14 -1.6 1,849,056 - SGL_RS10625 0.15 -0.4 1,849,230 + SGL_RS10625 0.25 +0.3 1,849,235 + SGL_RS10625 0.25 -0.9
Or see this region's nucleotide sequence