Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10615

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10610 and SGL_RS10615 are separated by 83 nucleotidesSGL_RS10615 and SGL_RS10620 are separated by 59 nucleotidesSGL_RS10620 and SGL_RS10625 are separated by 96 nucleotides SGL_RS10610: SGL_RS10610 - mannose-1-phosphate guanylyltransferase, at 1,845,795 to 1,846,865 _RS10610 SGL_RS10615: SGL_RS10615 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 1,846,949 to 1,848,241 _RS10615 SGL_RS10620: SGL_RS10620 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 1,848,301 to 1,848,702 _RS10620 SGL_RS10625: SGL_RS10625 - HlyD family efflux transporter periplasmic adaptor subunit, at 1,848,799 to 1,850,550 _RS10625 Position (kb) 1846 1847 1848 1849Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1846.963 kb on + strandat 1847.228 kb on - strand, within SGL_RS10615at 1847.287 kb on + strand, within SGL_RS10615at 1847.434 kb on - strand, within SGL_RS10615at 1847.468 kb on + strand, within SGL_RS10615at 1847.468 kb on + strand, within SGL_RS10615at 1847.504 kb on - strand, within SGL_RS10615at 1847.619 kb on + strand, within SGL_RS10615at 1847.649 kb on - strand, within SGL_RS10615at 1847.671 kb on - strand, within SGL_RS10615at 1847.718 kb on + strand, within SGL_RS10615at 1847.794 kb on - strand, within SGL_RS10615at 1848.164 kb on + strandat 1848.198 kb on + strandat 1848.246 kb on - strandat 1848.298 kb on + strandat 1848.306 kb on - strandat 1848.339 kb on - strandat 1848.393 kb on - strand, within SGL_RS10620at 1848.566 kb on + strand, within SGL_RS10620at 1848.566 kb on + strand, within SGL_RS10620at 1848.574 kb on - strand, within SGL_RS10620at 1848.671 kb on + strandat 1848.861 kb on - strandat 1849.044 kb on - strand, within SGL_RS10625at 1849.056 kb on - strand, within SGL_RS10625at 1849.230 kb on + strand, within SGL_RS10625at 1849.235 kb on + strand, within SGL_RS10625

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,846,963 + +0.3
1,847,228 - SGL_RS10615 0.22 -2.6
1,847,287 + SGL_RS10615 0.26 -2.7
1,847,434 - SGL_RS10615 0.38 -3.8
1,847,468 + SGL_RS10615 0.40 -2.4
1,847,468 + SGL_RS10615 0.40 -1.1
1,847,504 - SGL_RS10615 0.43 -2.0
1,847,619 + SGL_RS10615 0.52 -0.7
1,847,649 - SGL_RS10615 0.54 -2.1
1,847,671 - SGL_RS10615 0.56 -1.3
1,847,718 + SGL_RS10615 0.59 -3.7
1,847,794 - SGL_RS10615 0.65 -2.0
1,848,164 + -2.0
1,848,198 + -2.4
1,848,246 - -1.0
1,848,298 + -0.5
1,848,306 - -1.2
1,848,339 - -1.4
1,848,393 - SGL_RS10620 0.23 -1.7
1,848,566 + SGL_RS10620 0.66 -2.0
1,848,566 + SGL_RS10620 0.66 -3.6
1,848,574 - SGL_RS10620 0.68 -4.6
1,848,671 + -0.9
1,848,861 - -1.2
1,849,044 - SGL_RS10625 0.14 -1.6
1,849,056 - SGL_RS10625 0.15 -0.4
1,849,230 + SGL_RS10625 0.25 +0.3
1,849,235 + SGL_RS10625 0.25 -0.9

Or see this region's nucleotide sequence