Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10440 and SGL_RS10445 are separated by 240 nucleotides SGL_RS10445 and SGL_RS10450 are separated by 51 nucleotides SGL_RS10450 and SGL_RS10455 are separated by 209 nucleotides
SGL_RS10440: SGL_RS10440 - photosystem II q(b) protein, at 1,818,915 to 1,819,997
_RS10440
SGL_RS10445: SGL_RS10445 - L-threonylcarbamoyladenylate synthase, at 1,820,238 to 1,820,837
_RS10445
SGL_RS10450: SGL_RS10450 - TPM domain-containing protein, at 1,820,889 to 1,821,614
_RS10450
SGL_RS10455: SGL_RS10455 - hypothetical protein, at 1,821,824 to 1,822,036
_RS10455
Position (kb) 1820
1821 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 1820.209 kb on - strand at 1820.311 kb on - strand, within SGL_RS10445 at 1820.316 kb on + strand, within SGL_RS10445 at 1820.324 kb on - strand, within SGL_RS10445 at 1820.456 kb on - strand, within SGL_RS10445 at 1820.492 kb on + strand, within SGL_RS10445 at 1820.808 kb on + strand at 1820.963 kb on - strand, within SGL_RS10450 at 1820.968 kb on - strand, within SGL_RS10450 at 1821.189 kb on - strand, within SGL_RS10450 at 1821.210 kb on + strand, within SGL_RS10450 at 1821.241 kb on - strand, within SGL_RS10450 at 1821.512 kb on + strand, within SGL_RS10450 at 1821.646 kb on - strand at 1821.649 kb on + strand at 1821.676 kb on + strand at 1821.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,820,209 - -0.9 1,820,311 - SGL_RS10445 0.12 +7.2 1,820,316 + SGL_RS10445 0.13 +6.7 1,820,324 - SGL_RS10445 0.14 +8.0 1,820,456 - SGL_RS10445 0.36 +6.1 1,820,492 + SGL_RS10445 0.42 +7.5 1,820,808 + +6.7 1,820,963 - SGL_RS10450 0.10 -0.1 1,820,968 - SGL_RS10450 0.11 +4.0 1,821,189 - SGL_RS10450 0.41 -2.2 1,821,210 + SGL_RS10450 0.44 -0.6 1,821,241 - SGL_RS10450 0.48 -0.8 1,821,512 + SGL_RS10450 0.86 -0.2 1,821,646 - -0.5 1,821,649 + +0.5 1,821,676 + +0.5 1,821,748 - +0.4
Or see this region's nucleotide sequence