Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10310

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10305 and SGL_RS10310 are separated by 59 nucleotidesSGL_RS10310 and SGL_RS10315 are separated by 274 nucleotides SGL_RS10305: SGL_RS10305 - PIN/TRAM domain-containing protein, at 1,783,855 to 1,784,934 _RS10305 SGL_RS10310: SGL_RS10310 - hypothetical protein, at 1,784,994 to 1,785,560 _RS10310 SGL_RS10315: SGL_RS10315 - hypothetical protein, at 1,785,835 to 1,788,357 _RS10315 Position (kb) 1784 1785 1786Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1784.226 kb on + strand, within SGL_RS10305at 1784.249 kb on + strand, within SGL_RS10305at 1784.318 kb on + strand, within SGL_RS10305at 1784.383 kb on + strand, within SGL_RS10305at 1784.383 kb on + strand, within SGL_RS10305at 1784.472 kb on + strand, within SGL_RS10305at 1784.558 kb on - strand, within SGL_RS10305at 1784.708 kb on - strand, within SGL_RS10305at 1784.991 kb on + strandat 1784.991 kb on + strandat 1785.162 kb on - strand, within SGL_RS10310at 1785.291 kb on + strand, within SGL_RS10310at 1785.319 kb on - strand, within SGL_RS10310at 1785.356 kb on - strand, within SGL_RS10310at 1785.671 kb on + strandat 1785.679 kb on - strandat 1785.726 kb on - strandat 1785.763 kb on + strandat 1785.987 kb on - strandat 1785.996 kb on + strandat 1786.137 kb on - strand, within SGL_RS10315at 1786.299 kb on - strand, within SGL_RS10315at 1786.326 kb on - strand, within SGL_RS10315at 1786.437 kb on + strand, within SGL_RS10315at 1786.438 kb on - strand, within SGL_RS10315at 1786.559 kb on + strand, within SGL_RS10315

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,784,226 + SGL_RS10305 0.34 -1.7
1,784,249 + SGL_RS10305 0.36 -3.4
1,784,318 + SGL_RS10305 0.43 -3.4
1,784,383 + SGL_RS10305 0.49 +0.1
1,784,383 + SGL_RS10305 0.49 -2.1
1,784,472 + SGL_RS10305 0.57 -2.9
1,784,558 - SGL_RS10305 0.65 -2.6
1,784,708 - SGL_RS10305 0.79 -1.5
1,784,991 + -0.6
1,784,991 + +0.4
1,785,162 - SGL_RS10310 0.30 -2.9
1,785,291 + SGL_RS10310 0.52 -2.3
1,785,319 - SGL_RS10310 0.57 -2.8
1,785,356 - SGL_RS10310 0.64 -2.7
1,785,671 + +0.2
1,785,679 - -0.4
1,785,726 - -0.4
1,785,763 + +2.0
1,785,987 - +0.8
1,785,996 + -1.2
1,786,137 - SGL_RS10315 0.12 -0.8
1,786,299 - SGL_RS10315 0.18 -0.9
1,786,326 - SGL_RS10315 0.19 -1.7
1,786,437 + SGL_RS10315 0.24 +0.7
1,786,438 - SGL_RS10315 0.24 -0.3
1,786,559 + SGL_RS10315 0.29 +0.5

Or see this region's nucleotide sequence