Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10230

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS10225 and SGL_RS10230 are separated by 344 nucleotidesSGL_RS10230 and SGL_RS10235 are separated by 142 nucleotidesSGL_RS10235 and SGL_RS10240 are separated by 52 nucleotides SGL_RS10225: SGL_RS10225 - EAL domain-containing protein, at 1,764,835 to 1,766,925 _RS10225 SGL_RS10230: SGL_RS10230 - orange carotenoid protein N-terminal domain-containing protein, at 1,767,270 to 1,768,223 _RS10230 SGL_RS10235: SGL_RS10235 - fluorescence recovery protein, at 1,768,366 to 1,768,695 _RS10235 SGL_RS10240: SGL_RS10240 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 1,768,748 to 1,770,418 _RS10240 Position (kb) 1767 1768 1769Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1766.436 kb on + strand, within SGL_RS10225at 1766.500 kb on + strand, within SGL_RS10225at 1766.930 kb on - strandat 1767.288 kb on - strandat 1767.386 kb on + strand, within SGL_RS10230at 1767.496 kb on + strand, within SGL_RS10230at 1767.546 kb on + strand, within SGL_RS10230at 1767.546 kb on + strand, within SGL_RS10230at 1767.546 kb on + strand, within SGL_RS10230at 1767.554 kb on - strand, within SGL_RS10230at 1767.621 kb on + strand, within SGL_RS10230at 1767.810 kb on + strand, within SGL_RS10230at 1767.834 kb on - strand, within SGL_RS10230at 1767.869 kb on - strand, within SGL_RS10230at 1767.912 kb on - strand, within SGL_RS10230at 1767.930 kb on - strand, within SGL_RS10230at 1768.041 kb on - strand, within SGL_RS10230at 1768.442 kb on - strand, within SGL_RS10235at 1768.459 kb on + strand, within SGL_RS10235at 1768.519 kb on + strand, within SGL_RS10235at 1768.686 kb on - strandat 1768.722 kb on + strandat 1768.782 kb on + strandat 1768.889 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
1,766,436 + SGL_RS10225 0.77 -0.7
1,766,500 + SGL_RS10225 0.80 +2.2
1,766,930 - -0.3
1,767,288 - -0.3
1,767,386 + SGL_RS10230 0.12 -1.9
1,767,496 + SGL_RS10230 0.24 -1.3
1,767,546 + SGL_RS10230 0.29 +0.1
1,767,546 + SGL_RS10230 0.29 -1.4
1,767,546 + SGL_RS10230 0.29 -2.2
1,767,554 - SGL_RS10230 0.30 -0.9
1,767,621 + SGL_RS10230 0.37 -3.6
1,767,810 + SGL_RS10230 0.57 -3.7
1,767,834 - SGL_RS10230 0.59 -3.3
1,767,869 - SGL_RS10230 0.63 -0.8
1,767,912 - SGL_RS10230 0.67 -1.4
1,767,930 - SGL_RS10230 0.69 -3.2
1,768,041 - SGL_RS10230 0.81 -1.2
1,768,442 - SGL_RS10235 0.23 -1.2
1,768,459 + SGL_RS10235 0.28 -1.4
1,768,519 + SGL_RS10235 0.46 -2.0
1,768,686 - -2.6
1,768,722 + -1.7
1,768,782 + -1.2
1,768,889 + -0.5

Or see this region's nucleotide sequence