Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10060 and SGL_RS10065 are separated by 104 nucleotides SGL_RS10065 and SGL_RS10070 are separated by 160 nucleotides
SGL_RS10060: SGL_RS10060 - hemolysin family protein, at 1,730,166 to 1,731,206
_RS10060
SGL_RS10065: SGL_RS10065 - four-carbon acid sugar kinase family protein, at 1,731,311 to 1,732,648
_RS10065
SGL_RS10070: SGL_RS10070 - cryptochrome/photolyase family protein, at 1,732,809 to 1,734,323
_RS10070
Position (kb)
1731
1732
1733 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1730.487 kb on + strand, within SGL_RS10060 at 1730.495 kb on - strand, within SGL_RS10060 at 1730.495 kb on - strand, within SGL_RS10060 at 1731.231 kb on + strand at 1731.320 kb on - strand at 1731.322 kb on - strand at 1731.368 kb on + strand at 1731.467 kb on + strand, within SGL_RS10065 at 1731.497 kb on - strand, within SGL_RS10065 at 1731.568 kb on - strand, within SGL_RS10065 at 1731.674 kb on - strand, within SGL_RS10065 at 1731.676 kb on + strand, within SGL_RS10065 at 1731.684 kb on - strand, within SGL_RS10065 at 1731.730 kb on - strand, within SGL_RS10065 at 1731.871 kb on + strand, within SGL_RS10065 at 1731.874 kb on + strand, within SGL_RS10065 at 1731.874 kb on + strand, within SGL_RS10065 at 1731.893 kb on + strand, within SGL_RS10065 at 1732.067 kb on + strand, within SGL_RS10065 at 1732.359 kb on + strand, within SGL_RS10065 at 1732.369 kb on + strand, within SGL_RS10065 at 1732.482 kb on - strand, within SGL_RS10065 at 1732.530 kb on - strand at 1732.530 kb on - strand at 1732.595 kb on + strand at 1732.705 kb on + strand at 1733.017 kb on - strand, within SGL_RS10070 at 1733.052 kb on + strand, within SGL_RS10070 at 1733.052 kb on + strand, within SGL_RS10070 at 1733.052 kb on + strand, within SGL_RS10070 at 1733.052 kb on + strand, within SGL_RS10070 at 1733.060 kb on + strand, within SGL_RS10070 at 1733.060 kb on - strand, within SGL_RS10070 at 1733.060 kb on - strand, within SGL_RS10070 at 1733.060 kb on - strand, within SGL_RS10070 at 1733.060 kb on - strand, within SGL_RS10070 at 1733.060 kb on - strand, within SGL_RS10070 at 1733.153 kb on - strand, within SGL_RS10070 at 1733.153 kb on - strand, within SGL_RS10070 at 1733.153 kb on - strand, within SGL_RS10070 at 1733.174 kb on - strand, within SGL_RS10070 at 1733.265 kb on - strand, within SGL_RS10070 at 1733.507 kb on - strand, within SGL_RS10070
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,730,487 + SGL_RS10060 0.31 +1.1 1,730,495 - SGL_RS10060 0.32 -0.0 1,730,495 - SGL_RS10060 0.32 -0.3 1,731,231 + -1.1 1,731,320 - -0.9 1,731,322 - -5.1 1,731,368 + -1.4 1,731,467 + SGL_RS10065 0.12 -4.9 1,731,497 - SGL_RS10065 0.14 -3.8 1,731,568 - SGL_RS10065 0.19 -2.7 1,731,674 - SGL_RS10065 0.27 -4.7 1,731,676 + SGL_RS10065 0.27 -4.2 1,731,684 - SGL_RS10065 0.28 -3.9 1,731,730 - SGL_RS10065 0.31 -3.3 1,731,871 + SGL_RS10065 0.42 -5.0 1,731,874 + SGL_RS10065 0.42 -4.1 1,731,874 + SGL_RS10065 0.42 -5.0 1,731,893 + SGL_RS10065 0.43 -3.8 1,732,067 + SGL_RS10065 0.57 -5.0 1,732,359 + SGL_RS10065 0.78 -1.3 1,732,369 + SGL_RS10065 0.79 -1.9 1,732,482 - SGL_RS10065 0.88 -3.1 1,732,530 - -6.6 1,732,530 - -5.5 1,732,595 + -1.0 1,732,705 + +0.7 1,733,017 - SGL_RS10070 0.14 -1.7 1,733,052 + SGL_RS10070 0.16 -0.4 1,733,052 + SGL_RS10070 0.16 -0.2 1,733,052 + SGL_RS10070 0.16 -0.4 1,733,052 + SGL_RS10070 0.16 -2.2 1,733,060 + SGL_RS10070 0.17 -0.8 1,733,060 - SGL_RS10070 0.17 -0.4 1,733,060 - SGL_RS10070 0.17 +0.7 1,733,060 - SGL_RS10070 0.17 +0.4 1,733,060 - SGL_RS10070 0.17 +0.6 1,733,060 - SGL_RS10070 0.17 +0.2 1,733,153 - SGL_RS10070 0.23 +0.8 1,733,153 - SGL_RS10070 0.23 -0.1 1,733,153 - SGL_RS10070 0.23 +0.7 1,733,174 - SGL_RS10070 0.24 -0.1 1,733,265 - SGL_RS10070 0.30 +0.7 1,733,507 - SGL_RS10070 0.46 -0.5
Or see this region's nucleotide sequence