Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10065

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10060 and SGL_RS10065 are separated by 104 nucleotidesSGL_RS10065 and SGL_RS10070 are separated by 160 nucleotides SGL_RS10060: SGL_RS10060 - hemolysin family protein, at 1,730,166 to 1,731,206 _RS10060 SGL_RS10065: SGL_RS10065 - four-carbon acid sugar kinase family protein, at 1,731,311 to 1,732,648 _RS10065 SGL_RS10070: SGL_RS10070 - cryptochrome/photolyase family protein, at 1,732,809 to 1,734,323 _RS10070 Position (kb) 1731 1732 1733Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1730.487 kb on + strand, within SGL_RS10060at 1730.495 kb on - strand, within SGL_RS10060at 1730.495 kb on - strand, within SGL_RS10060at 1731.231 kb on + strandat 1731.320 kb on - strandat 1731.322 kb on - strandat 1731.368 kb on + strandat 1731.467 kb on + strand, within SGL_RS10065at 1731.497 kb on - strand, within SGL_RS10065at 1731.568 kb on - strand, within SGL_RS10065at 1731.674 kb on - strand, within SGL_RS10065at 1731.676 kb on + strand, within SGL_RS10065at 1731.684 kb on - strand, within SGL_RS10065at 1731.730 kb on - strand, within SGL_RS10065at 1731.871 kb on + strand, within SGL_RS10065at 1731.874 kb on + strand, within SGL_RS10065at 1731.874 kb on + strand, within SGL_RS10065at 1731.893 kb on + strand, within SGL_RS10065at 1732.067 kb on + strand, within SGL_RS10065at 1732.359 kb on + strand, within SGL_RS10065at 1732.369 kb on + strand, within SGL_RS10065at 1732.482 kb on - strand, within SGL_RS10065at 1732.530 kb on - strandat 1732.530 kb on - strandat 1732.595 kb on + strandat 1732.705 kb on + strandat 1733.017 kb on - strand, within SGL_RS10070at 1733.052 kb on + strand, within SGL_RS10070at 1733.052 kb on + strand, within SGL_RS10070at 1733.052 kb on + strand, within SGL_RS10070at 1733.052 kb on + strand, within SGL_RS10070at 1733.060 kb on + strand, within SGL_RS10070at 1733.060 kb on - strand, within SGL_RS10070at 1733.060 kb on - strand, within SGL_RS10070at 1733.060 kb on - strand, within SGL_RS10070at 1733.060 kb on - strand, within SGL_RS10070at 1733.060 kb on - strand, within SGL_RS10070at 1733.153 kb on - strand, within SGL_RS10070at 1733.153 kb on - strand, within SGL_RS10070at 1733.153 kb on - strand, within SGL_RS10070at 1733.174 kb on - strand, within SGL_RS10070at 1733.265 kb on - strand, within SGL_RS10070at 1733.507 kb on - strand, within SGL_RS10070

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,730,487 + SGL_RS10060 0.31 +1.1
1,730,495 - SGL_RS10060 0.32 -0.0
1,730,495 - SGL_RS10060 0.32 -0.3
1,731,231 + -1.1
1,731,320 - -0.9
1,731,322 - -5.1
1,731,368 + -1.4
1,731,467 + SGL_RS10065 0.12 -4.9
1,731,497 - SGL_RS10065 0.14 -3.8
1,731,568 - SGL_RS10065 0.19 -2.7
1,731,674 - SGL_RS10065 0.27 -4.7
1,731,676 + SGL_RS10065 0.27 -4.2
1,731,684 - SGL_RS10065 0.28 -3.9
1,731,730 - SGL_RS10065 0.31 -3.3
1,731,871 + SGL_RS10065 0.42 -5.0
1,731,874 + SGL_RS10065 0.42 -4.1
1,731,874 + SGL_RS10065 0.42 -5.0
1,731,893 + SGL_RS10065 0.43 -3.8
1,732,067 + SGL_RS10065 0.57 -5.0
1,732,359 + SGL_RS10065 0.78 -1.3
1,732,369 + SGL_RS10065 0.79 -1.9
1,732,482 - SGL_RS10065 0.88 -3.1
1,732,530 - -6.6
1,732,530 - -5.5
1,732,595 + -1.0
1,732,705 + +0.7
1,733,017 - SGL_RS10070 0.14 -1.7
1,733,052 + SGL_RS10070 0.16 -0.4
1,733,052 + SGL_RS10070 0.16 -0.2
1,733,052 + SGL_RS10070 0.16 -0.4
1,733,052 + SGL_RS10070 0.16 -2.2
1,733,060 + SGL_RS10070 0.17 -0.8
1,733,060 - SGL_RS10070 0.17 -0.4
1,733,060 - SGL_RS10070 0.17 +0.7
1,733,060 - SGL_RS10070 0.17 +0.4
1,733,060 - SGL_RS10070 0.17 +0.6
1,733,060 - SGL_RS10070 0.17 +0.2
1,733,153 - SGL_RS10070 0.23 +0.8
1,733,153 - SGL_RS10070 0.23 -0.1
1,733,153 - SGL_RS10070 0.23 +0.7
1,733,174 - SGL_RS10070 0.24 -0.1
1,733,265 - SGL_RS10070 0.30 +0.7
1,733,507 - SGL_RS10070 0.46 -0.5

Or see this region's nucleotide sequence