Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10060

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10055 and SGL_RS10060 are separated by 137 nucleotidesSGL_RS10060 and SGL_RS10065 are separated by 104 nucleotides SGL_RS10055: SGL_RS10055 - IS4-like element IS4Sa family transposase, at 1,729,012 to 1,730,028 _RS10055 SGL_RS10060: SGL_RS10060 - hemolysin family protein, at 1,730,166 to 1,731,206 _RS10060 SGL_RS10065: SGL_RS10065 - four-carbon acid sugar kinase family protein, at 1,731,311 to 1,732,648 _RS10065 Position (kb) 1730 1731 1732Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1730.136 kb on + strandat 1730.487 kb on + strand, within SGL_RS10060at 1730.495 kb on - strand, within SGL_RS10060at 1730.495 kb on - strand, within SGL_RS10060at 1731.231 kb on + strandat 1731.320 kb on - strandat 1731.322 kb on - strandat 1731.368 kb on + strandat 1731.467 kb on + strand, within SGL_RS10065at 1731.497 kb on - strand, within SGL_RS10065at 1731.568 kb on - strand, within SGL_RS10065at 1731.674 kb on - strand, within SGL_RS10065at 1731.676 kb on + strand, within SGL_RS10065at 1731.684 kb on - strand, within SGL_RS10065at 1731.730 kb on - strand, within SGL_RS10065at 1731.871 kb on + strand, within SGL_RS10065at 1731.874 kb on + strand, within SGL_RS10065at 1731.874 kb on + strand, within SGL_RS10065at 1731.893 kb on + strand, within SGL_RS10065at 1732.067 kb on + strand, within SGL_RS10065

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,730,136 + +0.6
1,730,487 + SGL_RS10060 0.31 +1.1
1,730,495 - SGL_RS10060 0.32 -0.0
1,730,495 - SGL_RS10060 0.32 -0.3
1,731,231 + -1.1
1,731,320 - -0.9
1,731,322 - -5.1
1,731,368 + -1.4
1,731,467 + SGL_RS10065 0.12 -4.9
1,731,497 - SGL_RS10065 0.14 -3.8
1,731,568 - SGL_RS10065 0.19 -2.7
1,731,674 - SGL_RS10065 0.27 -4.7
1,731,676 + SGL_RS10065 0.27 -4.2
1,731,684 - SGL_RS10065 0.28 -3.9
1,731,730 - SGL_RS10065 0.31 -3.3
1,731,871 + SGL_RS10065 0.42 -5.0
1,731,874 + SGL_RS10065 0.42 -4.1
1,731,874 + SGL_RS10065 0.42 -5.0
1,731,893 + SGL_RS10065 0.43 -3.8
1,732,067 + SGL_RS10065 0.57 -5.0

Or see this region's nucleotide sequence