Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09865 and SGL_RS09870 are separated by 79 nucleotides SGL_RS09870 and SGL_RS09875 are separated by 71 nucleotides SGL_RS09875 and SGL_RS09880 overlap by 11 nucleotides SGL_RS09880 and SGL_RS09885 are separated by 461 nucleotides
SGL_RS09865: SGL_RS09865 - cytochrome c oxidase subunit II, at 1,697,011 to 1,697,913
_RS09865
SGL_RS09870: SGL_RS09870 - pantothenate kinase, at 1,697,993 to 1,698,766
_RS09870
SGL_RS09875: SGL_RS09875 - glycosyltransferase, at 1,698,838 to 1,699,980
_RS09875
SGL_RS09880: SGL_RS09880 - hypothetical protein, at 1,699,970 to 1,700,431
_RS09880
SGL_RS09885: SGL_RS09885 - NAD(P)H-quinone oxidoreductase subunit L, at 1,700,893 to 1,701,135
_RS09885
Position (kb)
1698
1699
1700 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1697.865 kb on - strand at 1698.023 kb on + strand at 1698.048 kb on - strand at 1698.766 kb on + strand at 1698.775 kb on - strand at 1698.823 kb on - strand at 1698.877 kb on + strand at 1698.885 kb on - strand at 1698.885 kb on - strand at 1698.897 kb on + strand at 1698.931 kb on - strand at 1698.932 kb on - strand at 1698.960 kb on - strand, within SGL_RS09875 at 1698.961 kb on + strand, within SGL_RS09875 at 1698.961 kb on + strand, within SGL_RS09875 at 1698.976 kb on - strand, within SGL_RS09875 at 1698.981 kb on - strand, within SGL_RS09875 at 1699.021 kb on - strand, within SGL_RS09875 at 1699.047 kb on + strand, within SGL_RS09875 at 1699.055 kb on - strand, within SGL_RS09875 at 1699.072 kb on - strand, within SGL_RS09875 at 1699.079 kb on - strand, within SGL_RS09875 at 1699.164 kb on + strand, within SGL_RS09875 at 1699.357 kb on - strand, within SGL_RS09875 at 1699.425 kb on - strand, within SGL_RS09875 at 1699.538 kb on - strand, within SGL_RS09875 at 1699.571 kb on - strand, within SGL_RS09875 at 1699.727 kb on + strand, within SGL_RS09875 at 1699.753 kb on - strand, within SGL_RS09875 at 1700.056 kb on + strand, within SGL_RS09880 at 1700.105 kb on + strand, within SGL_RS09880 at 1700.206 kb on + strand, within SGL_RS09880 at 1700.241 kb on + strand, within SGL_RS09880 at 1700.267 kb on + strand, within SGL_RS09880 at 1700.285 kb on - strand, within SGL_RS09880 at 1700.389 kb on - strand at 1700.427 kb on + strand at 1700.603 kb on - strand at 1700.611 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,697,865 - -2.7 1,698,023 + -0.9 1,698,048 - -2.0 1,698,766 + -0.2 1,698,775 - -4.4 1,698,823 - -3.7 1,698,877 + -4.0 1,698,885 - -2.6 1,698,885 - -3.4 1,698,897 + -4.6 1,698,931 - -4.3 1,698,932 - -2.6 1,698,960 - SGL_RS09875 0.11 -2.9 1,698,961 + SGL_RS09875 0.11 -3.8 1,698,961 + SGL_RS09875 0.11 -3.6 1,698,976 - SGL_RS09875 0.12 -5.1 1,698,981 - SGL_RS09875 0.13 -3.3 1,699,021 - SGL_RS09875 0.16 -4.3 1,699,047 + SGL_RS09875 0.18 -0.9 1,699,055 - SGL_RS09875 0.19 -4.2 1,699,072 - SGL_RS09875 0.20 -2.4 1,699,079 - SGL_RS09875 0.21 -3.6 1,699,164 + SGL_RS09875 0.29 -2.6 1,699,357 - SGL_RS09875 0.45 -2.2 1,699,425 - SGL_RS09875 0.51 +0.7 1,699,538 - SGL_RS09875 0.61 -3.9 1,699,571 - SGL_RS09875 0.64 -4.7 1,699,727 + SGL_RS09875 0.78 -0.9 1,699,753 - SGL_RS09875 0.80 -3.8 1,700,056 + SGL_RS09880 0.19 -1.1 1,700,105 + SGL_RS09880 0.29 +1.1 1,700,206 + SGL_RS09880 0.51 -2.2 1,700,241 + SGL_RS09880 0.59 -1.0 1,700,267 + SGL_RS09880 0.64 -1.3 1,700,285 - SGL_RS09880 0.68 -2.2 1,700,389 - +0.1 1,700,427 + +0.1 1,700,603 - +0.9 1,700,611 + +0.6
Or see this region's nucleotide sequence