Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09875

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS09865 and SGL_RS09870 are separated by 79 nucleotidesSGL_RS09870 and SGL_RS09875 are separated by 71 nucleotidesSGL_RS09875 and SGL_RS09880 overlap by 11 nucleotidesSGL_RS09880 and SGL_RS09885 are separated by 461 nucleotides SGL_RS09865: SGL_RS09865 - cytochrome c oxidase subunit II, at 1,697,011 to 1,697,913 _RS09865 SGL_RS09870: SGL_RS09870 - pantothenate kinase, at 1,697,993 to 1,698,766 _RS09870 SGL_RS09875: SGL_RS09875 - glycosyltransferase, at 1,698,838 to 1,699,980 _RS09875 SGL_RS09880: SGL_RS09880 - hypothetical protein, at 1,699,970 to 1,700,431 _RS09880 SGL_RS09885: SGL_RS09885 - NAD(P)H-quinone oxidoreductase subunit L, at 1,700,893 to 1,701,135 _RS09885 Position (kb) 1698 1699 1700Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1697.865 kb on - strandat 1698.023 kb on + strandat 1698.048 kb on - strandat 1698.766 kb on + strandat 1698.775 kb on - strandat 1698.823 kb on - strandat 1698.877 kb on + strandat 1698.885 kb on - strandat 1698.885 kb on - strandat 1698.897 kb on + strandat 1698.931 kb on - strandat 1698.932 kb on - strandat 1698.960 kb on - strand, within SGL_RS09875at 1698.961 kb on + strand, within SGL_RS09875at 1698.961 kb on + strand, within SGL_RS09875at 1698.976 kb on - strand, within SGL_RS09875at 1698.981 kb on - strand, within SGL_RS09875at 1699.021 kb on - strand, within SGL_RS09875at 1699.047 kb on + strand, within SGL_RS09875at 1699.055 kb on - strand, within SGL_RS09875at 1699.072 kb on - strand, within SGL_RS09875at 1699.079 kb on - strand, within SGL_RS09875at 1699.164 kb on + strand, within SGL_RS09875at 1699.357 kb on - strand, within SGL_RS09875at 1699.425 kb on - strand, within SGL_RS09875at 1699.538 kb on - strand, within SGL_RS09875at 1699.571 kb on - strand, within SGL_RS09875at 1699.727 kb on + strand, within SGL_RS09875at 1699.753 kb on - strand, within SGL_RS09875at 1700.056 kb on + strand, within SGL_RS09880at 1700.105 kb on + strand, within SGL_RS09880at 1700.206 kb on + strand, within SGL_RS09880at 1700.241 kb on + strand, within SGL_RS09880at 1700.267 kb on + strand, within SGL_RS09880at 1700.285 kb on - strand, within SGL_RS09880at 1700.389 kb on - strandat 1700.427 kb on + strandat 1700.603 kb on - strandat 1700.611 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
1,697,865 - -2.7
1,698,023 + -0.9
1,698,048 - -2.0
1,698,766 + -0.2
1,698,775 - -4.4
1,698,823 - -3.7
1,698,877 + -4.0
1,698,885 - -2.6
1,698,885 - -3.4
1,698,897 + -4.6
1,698,931 - -4.3
1,698,932 - -2.6
1,698,960 - SGL_RS09875 0.11 -2.9
1,698,961 + SGL_RS09875 0.11 -3.8
1,698,961 + SGL_RS09875 0.11 -3.6
1,698,976 - SGL_RS09875 0.12 -5.1
1,698,981 - SGL_RS09875 0.13 -3.3
1,699,021 - SGL_RS09875 0.16 -4.3
1,699,047 + SGL_RS09875 0.18 -0.9
1,699,055 - SGL_RS09875 0.19 -4.2
1,699,072 - SGL_RS09875 0.20 -2.4
1,699,079 - SGL_RS09875 0.21 -3.6
1,699,164 + SGL_RS09875 0.29 -2.6
1,699,357 - SGL_RS09875 0.45 -2.2
1,699,425 - SGL_RS09875 0.51 +0.7
1,699,538 - SGL_RS09875 0.61 -3.9
1,699,571 - SGL_RS09875 0.64 -4.7
1,699,727 + SGL_RS09875 0.78 -0.9
1,699,753 - SGL_RS09875 0.80 -3.8
1,700,056 + SGL_RS09880 0.19 -1.1
1,700,105 + SGL_RS09880 0.29 +1.1
1,700,206 + SGL_RS09880 0.51 -2.2
1,700,241 + SGL_RS09880 0.59 -1.0
1,700,267 + SGL_RS09880 0.64 -1.3
1,700,285 - SGL_RS09880 0.68 -2.2
1,700,389 - +0.1
1,700,427 + +0.1
1,700,603 - +0.9
1,700,611 + +0.6

Or see this region's nucleotide sequence