Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09825

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09815 and SGL_RS09820 are separated by 53 nucleotidesSGL_RS09820 and SGL_RS09825 are separated by 134 nucleotidesSGL_RS09825 and SGL_RS09830 are separated by 148 nucleotidesSGL_RS09830 and SGL_RS09835 are separated by 50 nucleotides SGL_RS09815: SGL_RS09815 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 1,688,213 to 1,689,259 _RS09815 SGL_RS09820: SGL_RS09820 - ribosome maturation factor RimM, at 1,689,313 to 1,689,870 _RS09820 SGL_RS09825: SGL_RS09825 - SDR family oxidoreductase, at 1,690,005 to 1,690,934 _RS09825 SGL_RS09830: SGL_RS09830 - DUF4351 domain-containing protein, at 1,691,083 to 1,691,442 _RS09830 SGL_RS09835: SGL_RS09835 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 1,691,493 to 1,692,332 _RS09835 Position (kb) 1690 1691Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 1689.206 kb on + strandat 1689.321 kb on + strandat 1689.321 kb on + strandat 1689.387 kb on - strand, within SGL_RS09820at 1689.539 kb on - strand, within SGL_RS09820at 1689.598 kb on + strand, within SGL_RS09820at 1689.967 kb on + strandat 1690.256 kb on + strand, within SGL_RS09825at 1691.062 kb on - strandat 1691.120 kb on + strand, within SGL_RS09830at 1691.179 kb on + strand, within SGL_RS09830at 1691.207 kb on - strand, within SGL_RS09830at 1691.352 kb on + strand, within SGL_RS09830at 1691.365 kb on + strand, within SGL_RS09830at 1691.373 kb on - strand, within SGL_RS09830at 1691.390 kb on + strand, within SGL_RS09830at 1691.398 kb on - strand, within SGL_RS09830at 1691.497 kb on - strandat 1691.531 kb on + strandat 1691.592 kb on + strand, within SGL_RS09835at 1691.608 kb on - strand, within SGL_RS09835at 1691.650 kb on - strand, within SGL_RS09835at 1691.793 kb on - strand, within SGL_RS09835at 1691.886 kb on - strand, within SGL_RS09835

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,689,206 + +8.1
1,689,321 + -0.1
1,689,321 + -1.5
1,689,387 - SGL_RS09820 0.13 -2.4
1,689,539 - SGL_RS09820 0.41 -1.8
1,689,598 + SGL_RS09820 0.51 -1.8
1,689,967 + +0.8
1,690,256 + SGL_RS09825 0.27 -0.3
1,691,062 - +0.3
1,691,120 + SGL_RS09830 0.10 +0.4
1,691,179 + SGL_RS09830 0.27 +1.0
1,691,207 - SGL_RS09830 0.34 +0.3
1,691,352 + SGL_RS09830 0.75 -0.1
1,691,365 + SGL_RS09830 0.78 -0.7
1,691,373 - SGL_RS09830 0.81 -0.2
1,691,390 + SGL_RS09830 0.85 -1.3
1,691,398 - SGL_RS09830 0.88 +0.4
1,691,497 - +1.1
1,691,531 + -0.1
1,691,592 + SGL_RS09835 0.12 -0.3
1,691,608 - SGL_RS09835 0.14 -0.5
1,691,650 - SGL_RS09835 0.19 -1.3
1,691,793 - SGL_RS09835 0.36 +1.6
1,691,886 - SGL_RS09835 0.47 +0.3

Or see this region's nucleotide sequence