Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS19200 and SGL_RS09770 are separated by 62 nucleotides SGL_RS09770 and SGL_RS09775 are separated by 382 nucleotides SGL_RS09775 and SGL_RS20145 are separated by 264 nucleotides SGL_RS20145 and SGL_RS09780 are separated by 336 nucleotides
SGL_RS19200: SGL_RS19200 - IS5 family transposase, at 1,679,360 to 1,679,938
_RS19200
SGL_RS09770: SGL_RS09770 - hypothetical protein, at 1,680,001 to 1,680,279
_RS09770
SGL_RS09775: SGL_RS09775 - phosphoglucosamine mutase, at 1,680,662 to 1,682,134
_RS09775
SGL_RS20145: SGL_RS20145 - hypothetical protein, at 1,682,399 to 1,682,533
_RS20145
SGL_RS09780: SGL_RS09780 - SDR family oxidoreductase, at 1,682,870 to 1,683,529
_RS09780
Position (kb) 1680
1681
1682
1683 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 1679.758 kb on - strand, within SGL_RS19200 at 1679.859 kb on - strand, within SGL_RS19200 at 1680.066 kb on - strand, within SGL_RS09770 at 1682.157 kb on + strand at 1682.215 kb on - strand at 1682.234 kb on - strand at 1682.307 kb on - strand at 1682.495 kb on - strand, within SGL_RS20145 at 1682.518 kb on - strand, within SGL_RS20145 at 1682.570 kb on + strand at 1682.815 kb on - strand at 1683.036 kb on + strand, within SGL_RS09780 at 1683.088 kb on + strand, within SGL_RS09780
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,679,758 - SGL_RS19200 0.69 +0.8 1,679,859 - SGL_RS19200 0.86 +0.6 1,680,066 - SGL_RS09770 0.23 +0.4 1,682,157 + +5.4 1,682,215 - +5.1 1,682,234 - +5.3 1,682,307 - +4.7 1,682,495 - SGL_RS20145 0.71 -0.4 1,682,518 - SGL_RS20145 0.88 -0.4 1,682,570 + -0.3 1,682,815 - +0.7 1,683,036 + SGL_RS09780 0.25 -0.4 1,683,088 + SGL_RS09780 0.33 +1.3
Or see this region's nucleotide sequence